All Stories

  1. Managing mixed-stock fisheries: genotyping multi-SNP haplotypes increases power for genetic stock identification

    Article • Canadian Journal of Fisheries and Aquatic Sciences, April 2017, Canadian Science Publishing

    Dr James E Seeb

  2. RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

    Article • Molecular Ecology Resources, February 2017, Wiley

    Dr James E Seeb

  3. Genomic islands of divergence linked to ecotypic variation in sockeye salmon

    Article • Molecular Ecology, December 2016, Wiley

    Dr James E Seeb

  4. Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

    Article • Molecular Ecology Resources, November 2016, Wiley

    Dr James E Seeb

  5. Identification and Characterization of Sex-Associated Loci in Sockeye Salmon Using Genotyping-by-Sequencing and Comparison with a Sex-Determining Assay Based on thesdYGene

    Article • Journal of Heredity, July 2016, Oxford University Press (OUP)

    Dr James E Seeb

  6. Major histocompatibility complex diversity is positively associated with stream water temperatures in proximate populations of sockeye salmon

    Article • Journal of Evolutionary Biology, July 2016, Wiley

    Dr James E Seeb

  7. Sorting duplicated loci disentangles complexities of polyploid genomes masked by genotyping by sequencing

    Article • Molecular Ecology, April 2016, Wiley

    Dr James E Seeb

  8. Identification of Multiple QTL Hotspots in Sockeye Salmon (Oncorhynchus nerka) Using Genotyping-by-Sequencing and a Dense Linkage Map

    Article • Journal of Heredity, December 2015, Oxford University Press (OUP)

    Dr James E Seeb

  9. Recombination patterns reveal information about centromere location on linkage maps

    Article • Molecular Ecology Resources, December 2015, Wiley

    Dr James E Seeb

  10. Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming

    Article • PLoS ONE, November 2015, PLOS

    Dr James E Seeb

  11. Chum Salmon Genetic Diversity in the Northeastern Pacific Ocean Assessed with Single Nucleotide Polymorphisms (SNPs): Applications to Fishery Management

    Article • North American Journal of Fisheries Management, September 2015, Wiley

    Dr James E Seeb

  12. Response to May and Delany: We Never Said Wright was Wrong

    Article • Journal of Heredity, August 2015, Oxford University Press (OUP)

    Dr James E Seeb

  13. Consequences of Emergence Timing for the Growth and Relative Survival of Steelhead Fry from Naturally Spawning Wild and Hatchery Parents

    Article • Transactions of the American Fisheries Society, August 2015, Wiley

    Dr James E Seeb

  14. Effects of Crossovers Between Homeologs on Inheritance and Population Genomics in Polyploid-Derived Salmonid Fishes

    Article • Journal of Heredity, April 2015, Oxford University Press (OUP)

    Dr James E Seeb

  15. Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)

    Article • Molecular Ecology Resources, March 2015, Wiley

    Dr James E Seeb

  16. Signals of heterogeneous selection at an MHC locus in geographically proximate ecotypes of sockeye salmon

    Article • Molecular Ecology, November 2014, Wiley

    Dr James E Seeb

  17. Genetic Structure and Diversity of Japanese Chum Salmon Populations Inferred from Single-Nucleotide Polymorphism Markers

    Article • Transactions of the American Fisheries Society, August 2014, Wiley

    Dr James E Seeb

  18. Deep sequencing of the transcriptome and mining of single nucleotide polymorphisms (SNPs) provide genomic resources for applied studies in Chinook salmon (Oncorhynchus tshawytscha)

    Article • Conservation Genetics Resources, May 2014, Springer Science + Business Media

    Dr James E Seeb

  19. Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska

    Article • Canadian Journal of Fisheries and Aquatic Sciences, May 2014, Canadian Science Publishing

    Dr James E Seeb

  20. Parallel signatures of selection in temporally isolated lineages of pink salmon

    Article • Molecular Ecology, May 2014, Wiley

    Dr James E Seeb

  21. Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing

    Article • Evolutionary Applications, March 2014, Wiley

    Dr James E Seeb

  22. Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

    Article • Evolutionary Applications, January 2014, Wiley

    Dr James E Seeb

  23. So, you want to use next-generation sequencing in marine systems? Insight from the Pan-Pacific Advanced Studies Institute

    Article • Bulletin of Marine Science, January 2014, Bulletin of Marine Science

    Dr James E Seeb

  24. Temporally Isolated Lineages of Pink Salmon Reveal Unique Signatures of Selection on Distinct Pools of Standing Genetic Variation

    Article • Journal of Heredity, January 2014, Oxford University Press (OUP)

    Dr James E Seeb

  25. Secondary contact and changes in coastal habitat availability influence the nonequilibrium population structure of a salmonid (Oncorhynchus keta)

    Article • Molecular Ecology, November 2013, Wiley

    Dr James E Seeb

  26. Fine-scale sampling reveals distinct isolation by distance patterns in chum salmon (Oncorhynchus keta) populations occupying a glacially dynamic environment

    Article • Conservation Genetics, October 2013, Springer Science + Business Media

    Dr James E Seeb

  27. Single-nucleotide polymorphisms reveal distribution and migration of Chinook salmon (Oncorhynchus tshawytscha) in the Bering Sea and North Pacific Ocean

    Article • Canadian Journal of Fisheries and Aquatic Sciences, January 2013, Canadian Science Publishing

    Dr James E Seeb

  28. Rank and Order: Evaluating the Performance of SNPs for Individual Assignment in a Non-Model Organism

    Article • PLoS ONE, November 2012, PLOS

    Dr James E Seeb

  29. Landscape heterogeneity and local adaptation define the spatial genetic structure of Pacific salmon in a pristine environment

    Article • Conservation Genetics, September 2012, Springer Science + Business Media

    Dr James E Seeb

  30. Allele frequency stability in large, wild exploited populations over multiple generations: insights from Alaska sockeye salmon (Oncorhynchus nerka)

    Article • Canadian Journal of Fisheries and Aquatic Sciences, May 2012, Canadian Science Publishing

    Dr James E Seeb

  31. Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing

    Article • PLoS ONE, February 2012, PLOS

    Dr James E Seeb

  32. Signatures of natural selection among lineages and habitats inOncorhynchus mykiss

    Article • Ecology and Evolution, November 2011, Wiley

    Dr James E Seeb

  33. Single-Nucleotide Polymorphic Genotypes Reveal Patterns of Early Juvenile Migration of Sockeye Salmon in the Eastern Bering Sea

    Article • Transactions of the American Fisheries Society, May 2011, Wiley

    Dr James E Seeb

  34. Spawning Habitat and Geography Influence Population Structure and Juvenile Migration Timing of Sockeye Salmon in the Wood River Lakes, Alaska

    Article • Transactions of the American Fisheries Society, May 2011, Wiley

    Dr James E Seeb

  35. Single nucleotide polymorphisms unravel hierarchical divergence and signatures of selection among Alaskan sockeye salmon (Oncorhynchus nerka) populations

    Article • BMC Evolutionary Biology, February 2011, Springer Science + Business Media

    Dr James E Seeb

  36. Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies

    Article • Molecular Ecology Resources, February 2011, Wiley

    Dr James E Seeb

  37. Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

    Article • Molecular Ecology Resources, February 2011, Wiley

    Dr James E Seeb

  38. An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

    Article • Molecular Ecology Resources, February 2011, Wiley

    Dr James E Seeb

  39. Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales

    Article • Molecular Ecology Resources, February 2011, Wiley

    Dr James E Seeb

  40. Single nucleotide polymorphisms across a species’ range: implications for conservation studies of Pacific salmon

    Article • Molecular Ecology Resources, February 2011, Wiley

    Dr James E Seeb

  41. Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids

    Article • Molecular Ecology Resources, November 2010, Wiley

    Dr James E Seeb

  42. A perspective on positive relationships between genetic diversity and abundance in fishes

    Article • Molecular Ecology, November 2010, Wiley

    Dr James E Seeb

  43. Summer–Fall Distribution of Stocks of Immature Sockeye Salmon in the Bering Sea as Revealed by Single-Nucleotide Polymorphisms

    Article • Transactions of the American Fisheries Society, July 2010, Wiley

    Dr James E Seeb

  44. High-Resolution Melting Analysis for the Discovery of Novel Single-Nucleotide Polymorphisms in Rainbow and Cutthroat Trout for Species Identification

    Article • Transactions of the American Fisheries Society, May 2010, Wiley

    Dr James E Seeb

  45. SNP Genotyping by the 5′-Nuclease Reaction: Advances in High-Throughput Genotyping with Nonmodel Organisms

    Article • January 2009, Springer Science + Business Media

    Dr James E Seeb

  46. Advances in molecular technology and their impact on fisheries genetics

    Article • Fish and Fisheries, December 2008, Wiley

    Dr James E Seeb

  47. Mitochondrial DNA variation and genetic population structure of chum salmonOncorhynchus ketaaround the Pacific Rim

    Article • Journal of Fish Biology, October 2008, Wiley

    Dr James E Seeb

  48. Climate Change, Ecosystem Impacts, and Management for Pacific Salmon

    Article • Fisheries, October 2008, American Fisheries Society

    Dr James E Seeb

  49. Genetic and Ecological Divergence Defines Population Structure of Sockeye Salmon Populations Returning to Bristol Bay, Alaska, and Provides a Tool for Admixture Analysis

    Article • Transactions of the American Fisheries Society, January 2007, Wiley

    Dr James E Seeb

  50. Characterization of 19 single nucleotide polymorphism markers for coho salmon

    Article • Molecular Ecology Notes, September 2006, Wiley

    Dr James E Seeb

  51. Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon

    Article • Molecular Ecology, October 2005, Wiley

    Dr James E Seeb

  52. Single Nucleotide Polymorphisms Provide Rapid and Accurate Estimates of the Proportions of U.S. and Canadian Chinook Salmon Caught in Yukon River Fisheries

    Article • North American Journal of Fisheries Management, August 2005, Wiley

    Dr James E Seeb

  53. Characterization of 13 single nucleotide polymorphism markers for chum salmon

    Article • Molecular Ecology Notes, February 2005, Wiley

    Dr James E Seeb

  54. Use of the 5′-Nuclease Reaction for Single Nucleotide Polymorphism Genotyping in Chinook Salmon

    Article • Transactions of the American Fisheries Society, January 2005, Wiley

    Dr James E Seeb

  55. Introduction to Genetics of Subpolar Fish and Invertebrates

    Article • Environmental Biology of Fishes, March 2004, Springer Science + Business Media

    Dr James E Seeb

  56. Migration of Pacific Rim Chum Salmon on the High Seas: Insights from Genetic Data

    Article • Environmental Biology of Fishes, March 2004, Springer Science + Business Media

    Dr James E Seeb

  57. Introduction to genetics of subpolar fish and invertebrates

    Article • January 2004, Springer Science + Business Media

    Dr James E Seeb

  58. Migration of Pacific Rim chum salmon on the high seas: insights from genetic data

    Article • January 2004, Springer Science + Business Media

    Dr James E Seeb

  59. Genetic Diversity of Sockeye Salmon of Cook Inlet, Alaska, and Its Application to Management of Populations Affected by theExxon ValdezOil Spill

    Article • Transactions of the American Fisheries Society, November 2000, Wiley

    Dr James E Seeb

  60. Gene-centromere mapping of 312 loci in pink salmon by half-tetrad analysis

    Article • Genome, January 2000, Canadian Science Publishing

    Dr James E Seeb

  61. Allozyme and mitochondrial DNA variation describe ecologically important genetic structure of even-year pink salmon inhabiting Prince William Sound, Alaska

    Article • Ecology Of Freshwater Fish, September 1999, Wiley

    Dr James E Seeb

  62. Genetic Interpretation of Broad-Scale Microsatellite Polymorphism in Odd-Year Pink Salmon

    Article • Transactions of the American Fisheries Society, July 1998, Wiley

    Dr James E Seeb

  63. Genetic Relationships Among Salvelinus Species Inferred from Allozyme Data

    Article • Canadian Journal of Fisheries and Aquatic Sciences, December 1994, Canadian Science Publishing

    Dr James E Seeb

  64. Complementary uses of ecological and biochemical genetic data in identifying and conserving salmon populations

    Article • Fisheries Research, October 1993, Elsevier

    Dr James E Seeb

  65. Optimal thermal shocks for induced diploid gynogenesis in chinook salmon (Oncorhynchus tshawytscha)

    Article • Aquaculture, November 1990, Elsevier

    Dr James E Seeb

  66. Genetic Variation and Postglacial Dispersal of Populations of Northern Pike (Esox lucius) in North America

    Article • Canadian Journal of Fisheries and Aquatic Sciences, March 1987, Canadian Science Publishing

    Dr James E Seeb

  67. Gene mapping of isozyme loci in chum salmon

    Article • Journal of Heredity, November 1986, Oxford University Press (OUP)

    Dr James E Seeb

  68. Survival in diploid and triploid Pacific salmon hybrids

    Article • Aquaculture, October 1986, Elsevier

    Dr James E Seeb

  69. Use of Genetic Marks to Assess Stock Dynamics and Management Programs for Chum Salmon

    Article • Transactions of the American Fisheries Society, May 1986, Wiley

    Dr James E Seeb

  70. A Genetic Investigation of Suspected Redband Trout Populations

    Article • Copeia, February 1984, JSTOR

    Dr James E Seeb

  71. Economics and market potential of hydrogen production

    Article • September 1978, Office of Scientific and Technical Information (OSTI)

    Dr Yasuo Otsubo, Dr James E Seeb