All Stories

  1. Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS

    Article • Microbiology Resource Announcements, September 2018, ASM Journals

    Dr Ivan Erill

  2. Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages

    Article • Genome Announcements, June 2018, ASM Journals

    Dr Ivan Erill

  3. Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2

    Article • Genome Announcements, January 2018, ASM Journals

    Dr Ivan Erill

  4. Bacillus cereus Group Bacteriophage Flapjack Genome Sequence

    Article • Genome Announcements, August 2017, ASM Journals

    Dr Ivan Erill

  5. Comparative genomics of the DNA damage-inducible network in the Patescibacteria

    Article • Environmental Microbiology, July 2017, Wiley

    Dr Ivan Erill

  6. Complete Genome Sequences of Three phi29-Like Bacillus cereus Group Podoviridae

    Article • Genome Announcements, July 2017, ASM Journals

    Dr Ivan Erill

  7. Parametric bootstrapping for biological sequence motifs

    Article • BMC Bioinformatics, October 2016, Springer Science + Business Media

    Dr Ivan Erill

  8. Complete Genome Sequence of the Streptomyces Phage Nanodon

    Article • Genome Announcements, October 2016, ASM Journals

    Dr Ivan Erill

  9. Genome Sequence of Bacillus cereus Group Phage SalinJah

    Article • Genome Announcements, September 2016, ASM Journals

    Dr Ivan Erill

  10. A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data

    Article • Algorithms for Molecular Biology, July 2016, Springer Science + Business Media

    Dr Ivan Erill

  11. Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba

    Article • Genome Announcements, October 2015, ASM Journals

    Dr Ivan Erill

  12. Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore

    Article • Genome Announcements, October 2015, ASM Journals

    Dr Ivan Erill

  13. Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal

    Article • Journal of Bacteriology, May 2015, ASM Journals

    Dr Ivan Erill

  14. An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria

    Article • Journal of Bacteriology, May 2015, ASM Journals

    Dr Ivan Erill

  15. Identification and Characterization of VpsR and VpsT Binding Sites in Vibrio cholerae

    Article • Journal of Bacteriology, January 2015, ASM Journals

    Dr Ivan Erill, Dr David Zamorano

  16. Informational Requirements for Transcriptional Regulation

    Article • Journal of Computational Biology, May 2014, Mary Ann Liebert Inc

    Dr Ivan Erill

  17. Characterization of the SOS meta-regulon in the human gut microbiome

    Article • Bioinformatics, January 2014, Oxford University Press (OUP)

    Dr Ivan Erill

  18. Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon

    Article • Journal of Bacteriology, November 2013, ASM Journals

    Dr Ivan Erill

  19. CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria

    Article • Nucleic Acids Research, November 2013, Oxford University Press (OUP)

    Dr Ivan Erill

  20. scnRCA: A Novel Method to Detect Consistent Patterns of Translational Selection in Mutationally-Biased Genomes

    Article • PLoS ONE, October 2013, PLOS

    Dr Ivan Erill

  21. Inference of Self-Regulated Transcriptional Networks by Comparative Genomics

    Article • Evolutionary Bioinformatics, August 2012, Libertas Academica, Ltd.

    Dr Ivan Erill

  22. BioWord: A sequence manipulation suite for Microsoft Word

    Article • BMC Bioinformatics, January 2012, Springer Science + Business Media

    Dr Ivan Erill

  23. Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Dr Ivan Erill

  24. Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons

    Article • Mobile DNA, January 2011, Springer Science + Business Media

    Dr Ivan Erill

  25. xFITOM: a generic GUI tool to search for transcription factor binding sites

    Article • Bioinformation, July 2010, Biomedical Informatics

    Dr Ivan Erill

  26. Relative Codon Adaptation: A Generic Codon Bias Index for Prediction of Gene Expression

    Article • DNA Research, May 2010, Oxford University Press (OUP)

    Dr Ivan Erill

  27. A Rapid and Reliable Means of Assessing Hepatic Steatosis In Vivo Via Electrical Bioimpedance

    Article • Transplantation, September 2009, Wolters Kluwer Health

    Dr Ivan Erill

  28. The SOS Response Controls Integron Recombination

    Article • Science, May 2009, American Association for the Advancement of Science

    Dr Ivan Erill

  29. A reexamination of information theory-based methods for DNA-binding site identification

    Article • BMC Bioinformatics, February 2009, Springer Science + Business Media

    Dr Ivan Erill

  30. Aeons of distress: an evolutionary perspective on the bacterial SOS response

    Article • FEMS Microbiology Reviews, November 2007, Oxford University Press (OUP)

    Dr Ivan Erill

  31. Cohabitation of Two Different lexA Regulons in Pseudomonas putida

    Article • Journal of Bacteriology, October 2007, ASM Journals

    Dr Ivan Erill

  32. In vivo detection of liver steatosis in rats based on impedance spectroscopy

    Article • Physiological Measurement, July 2007, Institute of Physics Publishing

    Dr Ivan Erill

  33. Manufacturing and full characterization of silicon carbide-based multi-sensor micro-probes for biomedical applications

    Article • Microelectronics Journal, March 2007, Elsevier

    Dr Ivan Erill

  34. Induction of the SOS response by bacteriophage lytic development in Salmonella enterica

    Article • Virology, August 2006, Elsevier

    Dr Ivan Erill

  35. Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene

    Article • Microbiology, April 2006, Society for General Microbiology

    Dr Ivan Erill

  36. A SiC microdevice for the minimally invasive monitoring of ischemia in living tissues

    Article • Biomedical Microdevices, March 2006, Springer Science + Business Media

    Dr Ivan Erill

  37. Real-Time Direct Measurement of Human Liver Allograft Temperature from Recovery to Transplantation

    Article • Transplantation, February 2006, Wolters Kluwer Health

    Dr Ivan Erill

  38. Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain

    Article • Nucleic Acids Research, January 2006, Oxford University Press (OUP)

    Dr Ivan Erill

  39. Expression of Canonical SOS Genes Is Not under LexA Repression in Bdellovibrio bacteriovorus

    Article • Journal of Bacteriology, August 2005, ASM Journals

    Dr Ivan Erill

  40. Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics

    Article • Nucleic Acids Research, December 2004, Oxford University Press (OUP)

    Dr Ivan Erill

  41. Reconstruction of the evolutionary history of the LexA-binding sequence

    Article • Microbiology, November 2004, Society for General Microbiology

    Dr Ivan Erill

  42. Development of a CMOS-compatible PCR chip: comparison of design and system strategies

    Article • Journal of Micromechanics and Microengineering, August 2004, Institute of Physics Publishing

    Dr Ivan Erill

  43. Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum

    Article • Molecular Microbiology, August 2004, Wiley

    Dr Ivan Erill

  44. Biochemical analysis and optimization of inhibition and adsorption phenomena in glass–silicon PCR-chips

    Article • Sensors and Actuators B Chemical, December 2003, Elsevier

    Dr Ivan Erill

  45. In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon

    Article • Bioinformatics, November 2003, Oxford University Press (OUP)

    Dr Ivan Erill

  46. A Green Nonsulfur Bacterium, Dehalococcoides ethenogenes, with the LexA Binding Sequence Found in Gram-Positive Organisms

    Article • Journal of Bacteriology, November 2002, ASM Journals

    Dr Ivan Erill

  47. PROCAINAMIDE METABOLISM AND ACETYLATOR PHENOTYPE

    Article • January 1977, Elsevier

    Dr Ivan Erill