All Stories

  1. The Effect of Antibodies in the Presence of Syncytia During Viral Infections

    Article • The Bulletin of Mathematical Biophysics, May 2025, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  2. Quantifying Impact of HIV Receptor Surface Density Reveals Differences in Fusion Dynamics of HIV Strains

    Article • Viruses, April 2025, MDPI AG

    Dr Hana Maria Dobrovolny

  3. Analyzing Differences in Viral Dynamics Between Vaccinated and Unvaccinated RSV Patients

    Article • Epidemiologia, April 2025, MDPI AG

    Dr Hana Maria Dobrovolny

  4. Assessing the role of model choice in parameter identifiability of cancer treatment efficacy

    Article • Frontiers in Applied Mathematics and Statistics, March 2025, Frontiers

    Dr Hana Maria Dobrovolny

  5. How do viruses get around? A review of mathematical modeling of in-host viral transmission

    Article • Virology, March 2025, Elsevier

    Dr Hana Maria Dobrovolny

  6. Determining the best mathematical model for implementation of non-pharmaceutical interventions

    Article • Mathematical Biosciences and Engineering, January 2025, American Institute of Mathematical Sciences (AIMS)

    Dr Hana Maria Dobrovolny

  7. Quantitative analysis of respiratory viral triple infections: Examining within host dynamics of Influenza, RSV, and SARS-CoV-2

    Article • Mathematical Biosciences and Engineering, January 2025, American Institute of Mathematical Sciences (AIMS)

    Dr Hana Maria Dobrovolny

  8. Exploring the treatment of SARS-CoV-2 with modified vesicular stomatitis virus

    Article • Journal of Theoretical Biology, December 2024, Elsevier

    Dr Hana Maria Dobrovolny

  9. Spatiotemporal spread of oncolytic virus in a heterogeneous cell population

    Article • Computers in Biology and Medicine, December 2024, Elsevier

    Dr Hana Maria Dobrovolny

  10. Modeling Oncolytic Vaccinia Virus Therapy Highlights Neutrophil Impact on Tumor Suppression∗

    Article • November 2024, Cold Spring Harbor Laboratory Press

    Dr Hana Maria Dobrovolny

  11. Modeling the bystander effect during viral coinfection

    Article • Journal of Theoretical Biology, November 2024, Elsevier

    Dr Hana Maria Dobrovolny

  12. Viral Rebound After Antiviral Treatment: A Mathematical Modeling Study of the Role of Antiviral Mechanism of Action

    Article • Interdisciplinary Sciences Computational Life Sciences, July 2024, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  13. Virus-mediated cell fusion of SARS-CoV-2 variants

    Article • Mathematical Biosciences, March 2024, Elsevier

    Dr Hana Maria Dobrovolny

  14. Different routes of infection of H5N1 lead to changes in infecting time

    Article • Mathematical Biosciences, January 2024, Elsevier

    Dr Hana Maria Dobrovolny

  15. Editorial: Mathematical foundations in biological modelling and simulation

    Article • Mathematical Biosciences and Engineering, January 2024, American Institute of Mathematical Sciences (AIMS)

    Dr Hana Maria Dobrovolny

  16. Modeling of oncolytic viruses in a heterogeneous cell population to predict spread into non-cancerous cells

    Article • Computers in Biology and Medicine, October 2023, Elsevier

    Dr Hana Maria Dobrovolny

  17. Mathematical Modeling of Oncolytic Virus Therapy Reveals Role of the Immune Response

    Article • Viruses, August 2023, MDPI AG

    Dr Hana Maria Dobrovolny

  18. Quantifying the effect of defective viral genomes in respiratory syncytial virus infections

    Article • Mathematical Biosciences and Engineering, January 2023, American Institute of Mathematical Sciences (AIMS)

    Dr Hana Maria Dobrovolny

  19. Effect of cellular regeneration and viral transmission mode on viral spread

    Article • Journal of Theoretical Biology, November 2022, Elsevier

    Dr Hana Maria Dobrovolny

  20. Estimation of virus-mediated cell fusion rate of SARS-CoV-2

    Article • Virology, October 2022, Elsevier

    Dr Hana Maria Dobrovolny

  21. GPU acceleration and data fitting: Agent-based models of viral infections can now be parameterized in hours

    Article • Journal of Computational Science, May 2022, Elsevier

    Dr Hana Maria Dobrovolny

  22. Epidemiological Consequences of Viral Interference: A Mathematical Modeling Study of Two Interacting Viruses

    Article • Frontiers in Microbiology, March 2022, Frontiers

    Dr Hana Maria Dobrovolny

  23. Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility

    Article • Frontiers in Systems Biology, March 2022, Frontiers

    Dr Hana Maria Dobrovolny

  24. Treatment of Respiratory Viral Coinfections

    Article • Epidemiologia, February 2022, MDPI AG

    Dr Hana Maria Dobrovolny

  25. Using mathematical modeling to estimate time-independent cancer chemotherapy efficacy parameters

    Article • In Silico Pharmacology, December 2021, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  26. Estimation of viral kinetics model parameters in young and aged SARS-CoV-2 infected macaques

    Article • Royal Society Open Science, November 2021, Royal Society Publishing

    Dr Hana Maria Dobrovolny

  27. Predicting the effectiveness of chemotherapy using stochastic ODE models of tumor growth

    Article • Communications in Nonlinear Science and Numerical Simulation, October 2021, Elsevier

    Dr Hana Maria Dobrovolny

  28. A study of the effects of age on the dynamics of RSV in animal models

    Article • Virus Research, October 2021, Elsevier

    Dr Hana Maria Dobrovolny

  29. The role of syncytia during viral infections

    Article • Journal of Theoretical Biology, September 2021, Elsevier

    Dr Hana Maria Dobrovolny

  30. Quantifying the effect of trypsin and elastase on in vitro SARS-CoV infections

    Article • Virus Research, July 2021, Elsevier

    Dr Hana Maria Dobrovolny

  31. Effects of Doxorubicin Delivery by Nitrogen-Doped Graphene Quantum Dots on Cancer Cell Growth: Experimental Study and Mathematical Modeling

    Article • Nanomaterials, January 2021, MDPI AG

    Dr Hana Maria Dobrovolny

  32. Quantifying the effect of remdesivir in rhesus macaques infected with SARS-CoV-2

    Article • Virology, November 2020, Elsevier

    Dr Hana Maria Dobrovolny

  33. Initial Inoculum and the Severity of COVID-19: A Mathematical Modeling Study of the Dose-Response of SARS-CoV-2 Infections

    Article • Epidemiologia, October 2020, MDPI AG

    Dr Hana Maria Dobrovolny

  34. Modeling the role of asymptomatics in infection spread with application to SARS-CoV-2

    Article • PLOS One, August 2020, PLOS

    Dr Hana Maria Dobrovolny

  35. Energy Requirements for Loss of Viral Infectivity

    Article • Food and Environmental Virology, August 2020, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  36. SARS‐CoV‐2 coinfections: Could influenza and the common cold be beneficial?

    Article • Journal of Medical Virology, June 2020, Wiley

    Dr Hana Maria Dobrovolny

  37. Understanding the effect of measurement time on drug characterization

    Article • PLOS One, May 2020, PLOS

    Dr Hana Maria Dobrovolny

  38. An approximate solution of the interferon-dependent viral kinetics model of influenza

    Article • Journal of Theoretical Biology, April 2020, Elsevier

    Dr Hana Maria Dobrovolny

  39. Testing the limits of cardiac electrophysiology models through systematic variation of current

    Article • AIMS Mathematics, January 2020, American Institute of Mathematical Sciences (AIMS)

    Dr Hana Maria Dobrovolny

  40. The rate of viral transfer between upper and lower respiratory tracts determines RSV illness duration

    Article • Journal of Mathematical Biology, April 2019, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  41. Effect of stochasticity on coinfection dynamics of respiratory viruses

    Article • BMC Bioinformatics, April 2019, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  42. Superinfection and cell regeneration can lead to chronic viral coinfections

    Article • Journal of Theoretical Biology, April 2019, Elsevier

    Dr Hana Maria Dobrovolny

  43. Modeling of fusion inhibitor treatment of RSV in African green monkeys

    Article • November 2018, Elsevier

    Dr Hana Maria Dobrovolny

  44. Investigating Different Mechanisms of Action in Combination Therapy for Influenza

    Article • Frontiers in Pharmacology, October 2018, Frontiers

    Dr Hana Maria Dobrovolny

  45. A quantitative assessment of dynamical differences of RSV infections in vitro and in vivo

    Article • October 2018, Elsevier

    Dr Hana Maria Dobrovolny

  46. Intermittent treatment of severe influenza

    Article • Journal of Theoretical Biology, April 2018, Elsevier

    Dr Hana Maria Dobrovolny

  47. A comparison of RSV and influenza in vitro kinetic parameters reveals differences in infecting time

    Article • PLOS One, February 2018, PLOS

    Dr Hana Maria Dobrovolny

  48. Quantifying rotavirus kinetics in the REH tumor cell line using in vitro data

    Article • Virus Research, January 2018, Elsevier

    Dr Hana Maria Dobrovolny

  49. Modelling the emergence of influenza drug resistance: The roles of surface proteins, the immune response and antiviral mechanisms

    Article • PLOS One, July 2017, PLOS

    Dr Hana Maria Dobrovolny

  50. The impact of cell regeneration on the dynamics of viral coinfection

    Article • Chaos An Interdisciplinary Journal of Nonlinear Science, June 2017, American Institute of Physics

    Dr Hana Maria Dobrovolny

  51. The in vivo efficacy of neuraminidase inhibitors cannot be determined from the decay rates of influenza viral titers observed in treated patients

    Article • Scientific Reports, January 2017, Nature

    Dr Hana Maria Dobrovolny

  52. Coinfections of the Respiratory Tract: Viral Competition for Resources

    Article • PLOS One, May 2016, PLOS

    Dr Hana Maria Dobrovolny

  53. A comparison of methods for extracting influenza viral titer characteristics

    Article • Journal of Virological Methods, May 2016, Elsevier

    Dr Hana Maria Dobrovolny

  54. Differences in predictions of ODE models of tumor growth: a cautionary example

    Article • BMC Cancer, February 2016, Springer Science + Business Media

    Dr Hana Maria Dobrovolny

  55. Determining drug efficacy parameters for mathematical models of influenza

    Article • Journal of Biological Dynamics, June 2015, Taylor & Francis

    Dr Hana Maria Dobrovolny

  56. Assessing Uncertainty in A2 Respiratory Syncytial Virus Viral Dynamics

    Article • Computational and Mathematical Methods in Medicine, January 2015, Hindawi Publishing Corporation

    Dr Hana Maria Dobrovolny

  57. How Bad is it Doc? the Varying Predictions of ODE Cancer Growth Models

    Article • Biophysical Journal, January 2015, Elsevier

    Dr Hana Maria Dobrovolny

  58. Assessing Mathematical Models of Influenza Infections Using Features of the Immune Response

    Article • PLOS One, February 2013, PLOS

    Dr Hana Maria Dobrovolny

  59. Neuraminidase inhibitors for treatment of human and avian strain influenza: A comparative modeling study

    Article • Journal of Theoretical Biology, January 2011, Elsevier

    Dr Hana Maria Dobrovolny

  60. Exploring Cell Tropism as a Possible Contributor to Influenza Infection Severity

    Article • PLOS One, November 2010, PLOS

    Dr Hana Maria Dobrovolny, Professor Ralph A Tripp

  61. Spatial heterogeneity of restitution properties and the onset of alternans

    Article • September 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Hana Maria Dobrovolny

  62. High-Resolution High-Speed Panoramic Cardiac Imaging System

    Article • IEEE Transactions on Biomedical Engineering, March 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Hana Maria Dobrovolny

  63. Period-Doubling Bifurcation to Alternans in Paced Cardiac Tissue: Crossover from Smooth to Border-Collision Characteristics

    Article • Physical Review Letters, July 2007, American Physical Society (APS)

    Dr Hana Maria Dobrovolny

  64. A Fiber-Based Ratiometric Optical Cardiac Mapping Channel Using a Diffraction Grating and Split Detector

    Article • Biophysical Journal, July 2007, Elsevier

    Dr Hana Maria Dobrovolny

  65. Spatial heterogeneity of the restitution portrait correlates with alternans in paced cardiac tissue

    Article • Heart Rhythm, May 2005, Elsevier

    Dr Hana Maria Dobrovolny

  66. The Restitution Portrait:. A New Method for Investigating Rate-Dependent Restitution

    Article • Journal of Cardiovascular Electrophysiology, June 2004, Wiley

    Dr Hana Maria Dobrovolny, Alena Talkachova

  67. Linear and nonlinear measures predict swimming in the leech

    Article • October 2000, American Physical Society (APS)

    Dr Hana Maria Dobrovolny