All Stories

  1. AlphaFold2 Reveals Structural Patterns of Seasonal Haplotype Diversification in SARS-CoV-2 Spike Protein Variants
  2. Advances in Molecular Exploration of Crop Plants under Environmental Stresses from Genetic and Genomic Perspectives
  3. Evolution of Intrinsic Disorder in Protein Loops
  4. Evolution of Intrinsic Disorder in Protein Loops
  5. Seasonal effects decouple SARS-CoV-2 haplotypes worldwide
  6. Dissecting “Evolution – The origins and mechanisms of diversity” by Jonathan Bard
  7. The origin and language-like evolutionary behavior of proteins and translation
  8. Menzerath–Altmann’s Law of Syntax in RNA Accretion History
  9. The tree of life describes a tripartite cellular world
  10. Temperature and Latitude Correlate with SARS-CoV-2 Epidemiological Variables but not with Genomic Change Worldwide
  11. Dual RNase and β-lactamase Activity of a Single Enzyme Encoded in Archaea
  12. The origin and evolution of viruses inferred from fold family structure
  13. Editorial: Viruses, Genetic Exchange, and the Tree of Life
  14. New Pathways of Mutational Change in SARS-CoV-2 Proteomes Involve Regions of Intrinsic Disorder Important for Virus Replication and Release
  15. MANET 3.0: Hierarchy and modularity in evolving metabolic networks
  16. Genome-Wide Identification and Characterization of the Vacuolar H+-ATPase Subunit H Gene Family in Crop Plants
  17. Testing Empirical Support for Evolutionary Models that Root the Tree of Life
  18. Emergence of Hierarchical Modularity in Evolving Networks Uncovered by Phylogenomic Analysis
  19. Correction to: Genome-wide analysis of the MYB-CC gene family of maize
  20. Evolution of Macromolecular Structure: A ‘Double Tale’ of Biological Accretion and Diversification
  21. Genome-wide analysis of the MYB-CC gene family of maize
  22. Archaea-First and the Co-Evolutionary Diversification of Domains of Life
  23. Order and polarity in character state transformation models that root the tree of life
  24. Commercial Applications of DNA Profiling by Amplification with Arbitrary Oligonucleotide Primers
  25. Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions
  26. RubisCO and the Search for Biomolecular Culprits of Planetary Change
  27. Long-term evolution of viruses: A Janus-faced balance
  28. Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification
  29. Commentary: History of the ribosome and the origin of translation
  30. The Compressed Vocabulary of the Proteins of Archaea
  31. RNA World ☆
  32. Piecemeal Buildup of the Genetic Code, Ribosomes, and Genomes from Primordial tRNA Building Blocks
  33. The early history and emergence of molecular functions and modular scale-free network behavior
  34. The Phylogenomic Roots of Translation
  35. Arguments Reinforcing the Three-Domain View of Diversified Cellular Life
  36. A phylogenomic data-driven exploration of viral origins and evolution
  37. Ancestral Insertions and Expansions of rRNA do not Support an Origin of the Ribosome in Its Peptidyl Transferase Center
  38. Untangling the origin of viruses and their impact on cellular evolution
  39. Untangling Molecular Biodiversity
  40. Computing the origin and evolution of the ribosome from its structure — Uncovering processes of macromolecular accretion benefiting synthetic biology
  41. A Tree of Cellular Life Inferred from a Genomic Census of Molecular Functions
  42. The Natural History of Biocatalytic Mechanisms
  43. The importance of using realistic evolutionary models for retrodicting proteomes
  44. Global Patterns of Protein Domain Gain and Loss in Superkingdoms
  45. The Origin and Evolution of the Archaeal Domain
  46. Archaea: The First Domain of Diversified Life
  47. A Phylogenomic Census of Molecular Functions Identifies Modern Thermophilic Archaea as the Most Ancient Form of Cellular Life
  48. Structural Phylogenomics Retrodicts the Origin of the Genetic Code and Uncovers the Evolutionary Impact of Protein Flexibility
  49. CLUSTOM: A Novel Method for Clustering 16S rRNA Next Generation Sequences by Overlap Minimization
  50. Origin and Evolution of Protein Fold Designs Inferred from Phylogenomic Analysis of CATH Domain Structures in Proteomes
  51. Structural Phylogenomics Reveals Gradual Evolutionary Replacement of Abiotic Chemistries by Protein Enzymes in Purine Metabolism
  52. Evolutionary Optimization of Protein Folding
  53. Molecular Clock
  54. RNA World
  55. Cellular structure predated diversified life
  56. 23 The phylogenomic roots of modern biochemistry, translation, and the genetic code
  57. The Coevolutionary Roots of Biochemistry and Cellular Organization Challenge the RNA World Paradigm
  58. Comparative Analysis of Proteomes and Functionomes Provides Insights into Origins of Cellular Diversification
  59. Comparative Analysis of Barophily-Related Amino Acid Content in Protein Domains ofPyrococcus abyssiandPyrococcus furiosus
  60. A General Framework of Persistence Strategies for Biological Systems Helps Explain Domains of Life
  61. Fast Folding as a Constraint in the Evolution of Protein Structures
  62. Stress induces biphasic-rewiring and modularization patterns in the metabolomic networks of Escherichia coli
  63. Viral evolution
  64. Structural phylogenomics uncovers the early and concurrent origins of cysteine biosynthesis and iron-sulfur proteins
  65. The Impact of Oxygen on Metabolic Evolution: A Chemoinformatic Investigation
  66. Ribosomal History Reveals Origins of Modern Protein Synthesis
  67. Erratum to: The Phylogenomic Roots of Modern Biochemistry: Origins of Proteins, Cofactors and Protein Biosynthesis
  68. Biphasic patterns of diversification and the emergence of modules
  69. The Phylogenomic Roots of Modern Biochemistry: Origins of Proteins, Cofactors and Protein Biosynthesis
  70. Benefits of using molecular structure and abundance in phylogenomic analysis
  71. Evolution of Protein Architecture for Mechanical Function
  72. Protein Domain Structure Uncovers the Origin of Aerobic Metabolism and the Rise of Planetary Oxygen
  73. The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms
  74. Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya
  75. Evolutionary Genomics and Systems Biology . Edited by Gustavo Caetano‐Anollés. Hoboken (New Jersey): Wiley‐Blackwell. $125.00. xix + 465 p. + 32 pl.; ill.; index. ISBN: 978‐0‐470‐19514‐7. 2010.
  76. Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
  77. Evolution of protein architectures inferred from phylogenomic analysis of CATH
  78. Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer
  79. The functional make up of proteomes is remarkably conserved
  80. Additive and multiplicative genome-wide association models identify genes associated with growth
  81. Reductive evolution of proteomes and protein structures
  82. The proteomic complexity and rise of the primordial ancestor of diversified life
  83. Genetic structure and diversity of Phakopsora pachyrhizi isolates from soyabean
  84. Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome
  85. Proteome Evolution and the Metabolic Origins of Translation and Cellular Life
  86. A Universal Molecular Clock of Protein Folds and Its Power in Tracing the Early History of Aerobic Metabolism and Planet Oxygenation
  87. Reply to Mulkidjanian and Galperin: Zn may have constrained evolution during the Proterozoic but not the Archean
  88. BioEssays 8/2010
  89. Exploring the interplay of stability and function in protein evolution
  90. Frontmatter
  91. Index
  92. Color Plates
  93. Modularity and Dissipation in Evolution of Macromolecular Structures, Functions, and Networks
  94. Phylogenetic Utility of RNA Structure: Evolution's Arrow and Emergence of Early Biochemistry and Diversified Life
  95. The Origin of Modern 5S rRNA: A Case of Relating Models of Structural History to Phylogenetic Data
  96. History of biological metal utilization inferred through phylogenomic analysis of protein structures
  97. Emergence and Evolution of Modern Molecular Functions Inferred from Phylogenomic Analysis of Ontological Data
  98. The ancient history of the structure of ribonuclease P and the early origins of Archaea
  99. Evolutionary Genomics and Systems Biology
  100. Comparative Genomic and Phylogenetic Analyses Reveal the Evolution of the Core Two-Component Signal Transduction Systems in Enterobacteria
  101. The Evolutionary History of the Structure of 5S Ribosomal RNA
  102. The evolutionary significance of the long variable arm in transfer RNA
  103. The origin, evolution and structure of the protein world
  104. The origin and evolution of modern metabolism
  105. The Evolutionary Mechanics of Domain Organization in Proteomes and the Rise of Modularity in the Protein World
  106. Transfer RNA and the Origins of Diversified Life
  107. An approach of orthology detection from homologous sequences under minimum evolution
  108. Evolutionary Patterns in the Sequence and Structure of Transfer RNA: A Window into Early Translation and the Genetic Code
  109. NOBAI: a web server for character coding of geometrical and statistical features in RNA structure
  110. Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses
  111. Origins and evolution of modern biochemistry: insights from genomes and molecular structure
  112. Evolutionary Genomics: Linking Macromolecular Structure, Genomes and Biological Networks
  113. Introductory Editorial
  114. The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure
  115. Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
  116. The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture
  117. Common evolutionary trends for SINE RNA structures
  118. Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event?
  119. Global Phylogeny Determined by the Combination of Protein Domains in Proteomes
  120. A phylogenomic reconstruction of the protein world based on a genomic census of protein fold architecture
  121. Grass Evolution Inferred from Chromosomal Rearrangements and Geometrical and Statistical Features in RNA Structure
  122. Universal Sharing Patterns in Proteomes and Evolution of Protein Fold Architecture and Life
  123. Evolution of Genome Size in the Grasses
  124. Population Genetics and Spatial Structure of the Fairy Ring Fungus Marasmius oreades in a Norwegian Sand Dune Ecosystem
  125. An Evolutionarily Structured Universe of Protein Architecture
  126. Extensive and specific responses of a eukaryote to bacterial quorum-sensing signals
  127. Tracing the evolution of RNA structure in ribosomes
  128. Evolved RNA Secondary Structure and the Rooting of the Universal Tree of Life
  129. DNA Markers: Protocols, Applications, and Overview. Edited by Gustavo Caetano-Anollés and Peter M. Gresshoff
  130. High genome-wide mutation rates in vegetatively propagated bermudagrass
  131. DNA Analysis of Turfgrass Genetic Diversity
  132. Arbitrary oligonucleotides: primers for amplification and direct identification of nucleic acids, genes and organisms
  133. Molecular dissection and improvement of the nodule symbiosis in legumes
  134. DNA Amplification Fingerprinting
  135. Fingerprint Tailoring
  136. Recovering Amplified DNA from Silver Stained Gels
  137. The Origin of Bermudagrass (Cynodon) Off-Types Inferred by DNA Amplification Fingerprinting
  138. Resolving DNA Amplification Products Using Polyacrylamide Gel Electrophoresis and Silver Staining
  139. Molecular and Genetic Insights into Shoot Control of Nodulation in Soybean
  140. Scanning of nucleic acids by in vitro amplification: New developments and applications
  141. Nucleic Acid Scanning-by-Hybridization of Enterohemorrhagic Escherichia Coli Isolates Using Oligodeoxynucleotide Arrays
  142. Molecular phylogeny and DNA amplification fingerprinting of Petunia taxa
  143. Advances in the positional cloning of nodulation genes in soybean
  144. DNA Amplification Fingerprinting Provides Evidence That Discula destructiva, the Cause of Dogwood Anthracnose in North America, Is an Introduced Pathogen
  145. DNA Amplification Fingerprinting and Hybridization Analysis of Centipedegrass
  146. Positional Cloning of Nodulation Genes in Soybean: Coupling Dna Amplification and Bulked Segregant Analysis
  147. Nodulation of white clover (Trifolium repens) in the absence ofRhizobium
  148. Buffer components tailor DNA amplification with arbitrary primers.
  149. DNA Amplification Fingerprinting Using Arbitrary Mini-hairpin Oligonucleotide Primers
  150. DNA amplification fingerprinting: A general tool with applications in breeding, identification and phylogenetic analysis of plants
  151. Amplifying DNA with arbitrary oligonucleotide primers.
  152. DNA amplification fingerprinting using arbitrary oligonucleotide primers
  153. Silver staining of DNA in polyacrylamide gels
  154. Nodule Morphogenesis in the Absence of Rhizobium
  155. DNA Fingerprinting: MAAPing out a RAPD Redefinition?
  156. Growth and Movement of Spot Inoculated Rhizobium meliloti on the Root Surface of Alfalfa
  157. Anatomical analysis of nodule development in soybean reveals an additional autoregulatory control point
  158. DNA amplification fingerprinting: A strategy for genome analysis
  159. Plant Genetic Control of Nodulation
  160. Excision of Nodules Induced by Rhizobium meliloti Exopolysaccharide Mutants Releases Autoregulation in Alfalfa
  161. Fast and sensitive silver staining of DNA in polyacrylamide gels
  162. DNA Amplification Fingerprinting Using Very Short Arbitrary Oligonucleotide Primers
  163. Alfalfa Controls Nodulation during the Onset of Rhizobium-induced Cortical Cell Division
  164. Mature Nodules and Root Tips Control Nodulation in Soybean
  165. Plant Genetic Control Of Nodulation
  166. Plant Genetic Control of Nodulation in Legumes
  167. Chemotaxis, induced gene expression and competitiveness in the rhizosphere
  168. Rhizobium meliloti exopolysaccharide Mutants Elicit Feedback Regulation of Nodule Formation in Alfalfa
  169. Optimization of Surface Sterilization for Legume Seed
  170. Early induction of feedback regulatory responses governing nodulation in soybean
  171. Adsorption ofRhizobium meliloti to alfalfa roots: Dependence on divalent cations and pH
  172. Role of Motility and Chemotaxis in Efficiency of Nodulation by Rhizobium meliloti
  173. Plant genotyping using arbitrarily amplified DNA.