All Stories

  1. DSCAM-AS1-Driven Proliferation of Breast Cancer Cells Involves Regulation of Alternative Exon Splicing and 3′-End Usage

    Article • Cancers, June 2020, MDPI AG

    Giulio Ferrero

  2. Immune-Complexome Analysis Identifies Immunoglobulin-Bound Biomarkers That Predict the Response to Chemotherapy of Pancreatic Cancer Patients

    Article • Cancers, March 2020, MDPI AG

    Giulio Ferrero

  3. Correction for Tarallo et al., “Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples”

    Article • mSystems, February 2020, ASM Journals

    Giulio Ferrero

  4. Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq Data

    Article • International Journal of Molecular Sciences, December 2019, MDPI AG

    Giulio Ferrero

  5. Protocol for a reproducible circRNA analysis using Docker4Circ v4 (protocols.io.9vmh646)

    Article • November 2019, ZappyLab, Inc.

    Giulio Ferrero

  6. Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

    Article • mSystems, September 2019, ASM Journals

    Giulio Ferrero

  7. Docker4Circ: A Framework for a Reproducible Characterization of CircRNAs from RNA-Seq Data

    Article • July 2019, MDPI AG

    Giulio Ferrero

  8. Protocol for a reproducible circRNA analysis using Docker4Circ v3 (protocols.io.zrrf556)

    Article • April 2019, ZappyLab, Inc.

    Giulio Ferrero

  9. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

    Article • Nature Medicine, April 2019, Springer Science + Business Media

    Giulio Ferrero

  10. Integrative Analysis of Novel Metabolic Subtypes in Pancreatic Cancer Fosters New Prognostic Biomarkers

    Article • Frontiers in Oncology, February 2019, Frontiers

    Giulio Ferrero

  11. MethylFASTQ: A Tool Simulating Bisulfite Sequencing Data

    Article • February 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Giulio Ferrero

  12. Protocol for a reproducible circRNA analysis using Docker4Circ v2 (protocols.io.xkcfksw)

    Article • January 2019, ZappyLab, Inc.

    Giulio Ferrero

  13. Pregnancy Epigenetic Signature in T Helper 17 and T Regulatory Cells in Multiple Sclerosis

    Article • Frontiers in Immunology, January 2019, Frontiers

    Giulio Ferrero

  14. Protocol for a reproducible circRNA analysis using Docker4Circ v1 (protocols.io.wwaffae)

    Article • January 2019, ZappyLab, Inc.

    Giulio Ferrero

  15. The expression of LINE1-MET chimeric transcript identifies a subgroup of aggressive breast cancers

    Article • International Journal of Cancer, October 2018, Wiley

    Tiziana Venesio, Giulio Ferrero

  16. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines

    Article • BMC Bioinformatics, October 2018, Springer Science + Business Media

    Giulio Ferrero

  17. ParallNormal: An Efficient Variant Calling Pipeline for Unmatched Sequencing Data

    Article • March 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Giulio Ferrero

  18. Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis

    Article • Oncotarget, February 2018, Impact Journals, LLC

    Giulio Ferrero

  19. Luminal lncRNAs Regulation by ERα-Controlled Enhancers in a Ligand-Independent Manner in Breast Cancer Cells

    Article • International Journal of Molecular Sciences, February 2018, MDPI AG

    Giulio Ferrero

  20. Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species

    Article • Oncotarget, December 2017, Impact Journals, LLC

    Giulio Ferrero

  21. Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data

    Article • Scientific Reports, August 2017, Springer Science + Business Media

    Giulio Ferrero

  22. Biologic Data of Cynomolgus Monkeys Maintained under Laboratory Conditions

    Article • PLoS ONE, June 2016, PLOS

    Giulio Ferrero

  23. E2 Regulates Epigenetic Signature on Neuroglobin Enhancer-Promoter in Neuronal Cells

    Article • Frontiers in Cellular Neuroscience, June 2016, Frontiers

    Giulio Ferrero

  24. Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer

    Article • Oncotarget, November 2015, Impact Journals, LLC

    Giulio Ferrero

  25. Differentially methylated microRNAs in prediagnostic samples of subjects who developed breast cancer in the European Prospective Investigation into Nutrition and Cancer (EPIC-Italy) cohort

    Article • Carcinogenesis, July 2015, Oxford University Press (OUP)

    Giulio Ferrero

  26. Genome-wide activity of unliganded estrogen receptor-α in breast cancer cells

    Article • Proceedings of the National Academy of Sciences, March 2014, Proceedings of the National Academy of Sciences

    Giulio Ferrero

  27. Sequence Alignment Tools: One Parallel Pattern to Rule Them All?

    Article • BioMed Research International, January 2014, Hindawi Publishing Corporation

    Prof Marco Aldinucci, Giulio Ferrero

  28. Genomic lens on neuroglobin transcription

    Article • IUBMB Life, January 2014, Wiley

    Giulio Ferrero