All Stories

  1. Nonproteolytic ubiquitination regulates chromatin occupancy by the NCoR/SMRT/HDAC3 corepressor complex in MCF-7 breast cancer cells

    Article • Proceedings of the National Academy of Sciences, April 2025, Proceedings of the National Academy of Sciences

    Valentina Perissi, Giulio Ferrero

  2. Fasting-mimicking diet counteracts gut microbial dysbiosis in experimental Lynch syndrome

    Article • March 2025, Cold Spring Harbor Laboratory Press

    Giulio Ferrero

  3. Mitotane activates ATF4/ATF3 axis triggering endoplasmic reticulum stress in adrenocortical carcinoma cells

    Article • Biomedicine & Pharmacotherapy, March 2025, Elsevier

    Giulio Ferrero

  4. Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development

    Article • Biomarker Research, February 2025, Springer Science + Business Media

    Giulio Ferrero

  5. TPM4 overexpression drives colon epithelial cell tumorigenesis by suppressing differentiation and promoting proliferation

    Article • Neoplasia, January 2025, Elsevier

    Giulio Ferrero

  6. Modulation of faecal miRNAs highlights the preventive effects of a Mediterranean low-inflammatory dietary intervention

    Article • Clinical Nutrition, April 2024, Elsevier

    Giulio Ferrero

  7. SnoRNA profiling in colorectal cancer and assessment of non-invasive biomarker capacity by ddPCR in fecal samples

    Article • iScience, March 2024, Elsevier

    Giulio Ferrero

  8. Diet-Specific Multi-Omics Markers Associated with Metabolic Health Benefits Can Be Determined in Vegan Population

    Article • February 2024, MDPI AG

    Giulio Ferrero

  9. Small noncoding RNAs and sperm nuclear basic proteins reflect the environmental impact on germ cells

    Article • World Journal of Surgery, January 2024, Springer Science + Business Media

    Giulio Ferrero

  10. A partial epithelial‐mesenchymal transition signature for highly aggressive colorectal cancer cells that survive under nutrient restriction

    Article • The Journal of Pathology, January 2024, Wiley

    Giulio Ferrero

  11. Tamoxifen Activates Transcription Factor EB and Triggers Protective Autophagy in Breast Cancer Cells by Inducing Lysosomal Calcium Release: A Gateway to the Onset of Endocrine Resistance

    Article • International Journal of Molecular Sciences, December 2023, MDPI AG

    Giulio Ferrero

  12. Effect of traditional or heat‐not‐burn cigarette smoking on circulating miRNAs in healthy subjects

    Article • European Journal of Clinical Investigation, December 2023, Wiley

    Prof. Giuseppe Biondi-Zoccai, Giulio Ferrero

  13. Profiling small RNAs in fecal immunochemical tests: is it possible?

    Article • Molecular Cancer, October 2023, Springer Science + Business Media

    Giulio Ferrero

  14. A Fecal MicroRNA Signature by Small RNA Sequencing Accurately Distinguishes Colorectal Cancers: Results From a Multicenter Study

    Article • Gastroenterology, September 2023, Elsevier

    Giulio Ferrero

  15. Profiling small RNAs in CRC screening samples such as the widely used fecal immunochemical test, is it possible?

    Article • May 2023, Cold Spring Harbor Laboratory Press

    Giulio Ferrero

  16. Gluten-free diet affects fecal small non-coding RNA profiles and microbiome composition in celiac disease supporting a host-gut microbiota crosstalk

    Article • Gut Microbes, February 2023, Taylor & Francis

    Giulio Ferrero

  17. The 8q24 region hosts miRNAs altered in biospecimens of colorectal and bladder cancer patients

    Article • Cancer Medicine, November 2022, Wiley

    Giulio Ferrero

  18. DNA damage response and repair genes in advanced bone and soft tissue sarcomas: An 8-gene signature as a candidate predictive biomarker of response to trabectedin and olaparib combination

    Article • Frontiers in Oncology, August 2022, Frontiers

    Giulio Ferrero

  19. Integrative genomic and transcriptomic analyses illuminate the ontology of HER2-low breast carcinomas

    Article • Genome Medicine, August 2022, Springer Science + Business Media

    Giulio Ferrero

  20. A Regulatory Axis between Epithelial Splicing Regulatory Proteins and Estrogen Receptor α Modulates the Alternative Transcriptome of Luminal Breast Cancer

    Article • International Journal of Molecular Sciences, July 2022, MDPI AG

    Giulio Ferrero

  21. Combined miRNA and SERS urine liquid biopsy for the point-of-care diagnosis and molecular stratification of bladder cancer

    Article • World Journal of Surgery, April 2022, Springer Science + Business Media

    Giulio Ferrero

  22. The Estrogen Receptor α Signaling Pathway Controls Alternative Splicing in the Absence of Ligands in Breast Cancer Cells

    Article • Cancers, December 2021, MDPI AG

    Giulio Ferrero

  23. EphA2 Expression in Bone Sarcomas: Bioinformatic Analyses and Preclinical Characterization in Patient-Derived Models of Osteosarcoma, Ewing’s Sarcoma and Chondrosarcoma

    Article • Cells, October 2021, MDPI AG

    Giulio Ferrero

  24. Faecal miRNA profiles associated with age, sex, BMI, and lifestyle habits in healthy individuals

    Article • Scientific Reports, October 2021, Springer Science + Business Media

    Giulio Ferrero

  25. Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals

    Article • Gut, July 2021, BMJ

    Giulio Ferrero

  26. Intake of Natural Compounds and Circulating microRNA Expression Levels: Their Relationship Investigated in Healthy Subjects With Different Dietary Habits

    Article • Frontiers in Pharmacology, January 2021, Frontiers

    Giulio Ferrero

  27. Computational Analysis of circRNA Expression Data

    Article • January 2021, Springer Science + Business Media

    Giulio Ferrero

  28. In pancreatic cancer, chemotherapy increases antitumor responses to tumor-associated antigens and potentiates DNA vaccination

    Article • Journal for ImmunoTherapy of Cancer, October 2020, BMJ

    Giulio Ferrero

  29. Abstract 269: Small non-coding RNA profiling in stool and plasma samples to explore potential biomarkers for colorectal cancer diagnosis

    Article • Cancer Research, August 2020, American Association for Cancer Research (AACR)

    Giulio Ferrero

  30. Abstract 257: Whole miRNome profiling in fecal and plasma exosome samples for the diagnosis of colorectal cancer

    Article • Cancer Research, August 2020, American Association for Cancer Research (AACR)

    Giulio Ferrero

  31. Small Nucleolar RNAs Determine Resistance to Doxorubicin in Human Osteosarcoma

    Article • International Journal of Molecular Sciences, June 2020, MDPI AG

    Giulio Ferrero

  32. DSCAM-AS1-Driven Proliferation of Breast Cancer Cells Involves Regulation of Alternative Exon Splicing and 3′-End Usage

    Article • Cancers, June 2020, MDPI AG

    Giulio Ferrero

  33. Immune-Complexome Analysis Identifies Immunoglobulin-Bound Biomarkers That Predict the Response to Chemotherapy of Pancreatic Cancer Patients

    Article • Cancers, March 2020, MDPI AG

    Giulio Ferrero

  34. Correction for Tarallo et al., “Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples”

    Article • mSystems, February 2020, ASM Journals

    Giulio Ferrero

  35. Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq Data

    Article • International Journal of Molecular Sciences, December 2019, MDPI AG

    Giulio Ferrero

  36. Protocol for a reproducible circRNA analysis using Docker4Circ v4

    Article • November 2019, Springer Science + Business Media

    Giulio Ferrero

  37. Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

    Article • Nature Medicine, October 2019, Springer Science + Business Media

    Giulio Ferrero

  38. Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

    Article • mSystems, September 2019, ASM Journals

    Giulio Ferrero

  39. Docker4Circ: A Framework for a Reproducible Characterization of CircRNAs from RNA-Seq Data

    Article • July 2019, MDPI AG

    Giulio Ferrero

  40. Protocol for a reproducible circRNA analysis using Docker4Circ v3

    Article • April 2019, Springer Science + Business Media

    Giulio Ferrero

  41. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

    Article • Nature Medicine, April 2019, Springer Science + Business Media

    Giulio Ferrero

  42. Integrative Analysis of Novel Metabolic Subtypes in Pancreatic Cancer Fosters New Prognostic Biomarkers

    Article • Frontiers in Oncology, February 2019, Frontiers

    Giulio Ferrero

  43. MethylFASTQ: A Tool Simulating Bisulfite Sequencing Data

    Article • February 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Giulio Ferrero

  44. Protocol for a reproducible circRNA analysis using Docker4Circ v2

    Article • January 2019, Springer Science + Business Media

    Giulio Ferrero

  45. Pregnancy Epigenetic Signature in T Helper 17 and T Regulatory Cells in Multiple Sclerosis

    Article • Frontiers in Immunology, January 2019, Frontiers

    Giulio Ferrero

  46. Protocol for a reproducible circRNA analysis using Docker4Circ v1

    Article • January 2019, Springer Science + Business Media

    Giulio Ferrero

  47. The expression of LINE1-MET chimeric transcript identifies a subgroup of aggressive breast cancers

    Article • International Journal of Cancer, October 2018, Wiley

    Tiziana Venesio, Giulio Ferrero

  48. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines

    Article • BMC Bioinformatics, October 2018, Springer Science + Business Media

    Giulio Ferrero

  49. Abstract 2761: Antibody and T cell response profiling in pancreatic cancer patients before and after chemotherapy identify tumor associated antigens suitable for immunotherapy

    Article • Cancer Research, July 2018, American Association for Cancer Research (AACR)

    Giulio Ferrero

  50. ParallNormal: An Efficient Variant Calling Pipeline for Unmatched Sequencing Data

    Article • March 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Giulio Ferrero

  51. Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis

    Article • Oncotarget, February 2018, Impact Journals, LLC

    Giulio Ferrero

  52. Luminal lncRNAs Regulation by ERα-Controlled Enhancers in a Ligand-Independent Manner in Breast Cancer Cells

    Article • International Journal of Molecular Sciences, February 2018, MDPI AG

    Giulio Ferrero

  53. Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species

    Article • Oncotarget, December 2017, Impact Journals, LLC

    Giulio Ferrero

  54. Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data

    Article • Scientific Reports, August 2017, Springer Science + Business Media

    Giulio Ferrero

  55. Abstract LB-330: Stool and plasma miRNA profiles by next-generation sequencing: a study on subjects with colorectal cancer and precancerous lesions

    Article • Cancer Research, July 2017, American Association for Cancer Research (AACR)

    Giulio Ferrero

  56. Abstract 4431: Urine microRNA profiling in bladder cancer by next-generation sequencing

    Article • Cancer Research, July 2017, American Association for Cancer Research (AACR)

    Giulio Ferrero

  57. Next-generation sequencing for miRNA profiling of stool and plasma samples of patients with colorectal cancer or precancerous lesions

    Article • European Journal of Cancer, February 2017, Elsevier

    Giulio Ferrero

  58. Deregulated Genes in Hematopoietic Stem Cells Isolated from Spleen of Patients with Myelofibrosis

    Article • Blood, December 2016, American Society of Hematology

    Giulio Ferrero

  59. Biologic Data of Cynomolgus Monkeys Maintained under Laboratory Conditions

    Article • PLOS One, June 2016, PLOS

    Giulio Ferrero

  60. E2 Regulates Epigenetic Signature on Neuroglobin Enhancer-Promoter in Neuronal Cells

    Article • Frontiers in Cellular Neuroscience, June 2016, Frontiers

    Giulio Ferrero

  61. Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer

    Article • Oncotarget, November 2015, Impact Journals, LLC

    Giulio Ferrero

  62. Abstract LB-188: Epigenome-wide study in prediagnostic samples from the European Prospective Investigation into Nutrition and Cancer (EPIC-Italy) cohort: Differentially methylated microRNAs in subjects who developed breast cancer

    Article • Cancer Research, August 2015, American Association for Cancer Research (AACR)

    Giulio Ferrero

  63. Differentially methylated microRNAs in prediagnostic samples of subjects who developed breast cancer in the European Prospective Investigation into Nutrition and Cancer (EPIC-Italy) cohort

    Article • Carcinogenesis, July 2015, Oxford University Press (OUP)

    Giulio Ferrero

  64. Genome-wide activity of unliganded estrogen receptor-α in breast cancer cells

    Article • Proceedings of the National Academy of Sciences, March 2014, Proceedings of the National Academy of Sciences

    Giulio Ferrero

  65. Sequence Alignment Tools: One Parallel Pattern to Rule Them All?

    Article • BioMed Research International, January 2014, Wiley

    Prof Marco Aldinucci, Giulio Ferrero

  66. Genomic lens on neuroglobin transcription

    Article • IUBMB Life, January 2014, Wiley

    Giulio Ferrero