All Stories

  1. InterTADs: integration of multi-omics data on topologically associated domains, application to chronic lymphocytic leukemia

    Article • NAR Genomics and Bioinformatics, January 2022, Oxford University Press (OUP)

    Dr Fotis E. Psomopoulos

  2. ELIXIR Software Management Plan for Life Sciences

    Article • October 2021, Center for Open Science

    Dr Fotis E. Psomopoulos

  3. Combining Multiple RNA-Seq Data Analysis Algorithms Using Machine Learning Improves Differential Isoform Expression Analysis

    Article • Methods and Protocols, September 2021, MDPI AG

    Dr Fotis E. Psomopoulos

  4. miRkit: R framework analyzing miRNA PCR array data

    Article • BMC Research Notes, September 2021, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  5. RPS15 mutations rewire RNA translation in chronic lymphocytic leukemia

    Article • Blood Advances, July 2021, American Society of Hematology

    Dr Fotis E. Psomopoulos

  6. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group

    Article • Wellcome Open Research, May 2021, Faculty of 1000, Ltd.

    Dr Joanne Stocks, Dr Fotis E. Psomopoulos

  7. Higher-order immunoglobulin repertoire restrictions in CLL: the illustrative case of stereotyped subsets 2 and 169

    Article • Blood, April 2021, American Society of Hematology

    Dr Fotis E. Psomopoulos

  8. The Calcitriol/Vitamin D Receptor System Regulates Key Immune Signaling Pathways in Chronic Lymphocytic Leukemia

    Article • Cancers, January 2021, MDPI AG

    Dr Fotis E. Psomopoulos

  9. Ancestral state reconstruction of metabolic pathways across pangenome ensembles

    Article • Microbial Genomics, November 2020, Society for General Microbiology

    Dr Fotis E. Psomopoulos

  10. Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1

    Article • Genes, September 2020, MDPI AG

    Dr Fotis E. Psomopoulos

  11. T-Cell Dynamics in Chronic Lymphocytic Leukemia under Different Treatment Modalities

    Article • Clinical Cancer Research, September 2020, American Association for Cancer Research (AACR)

    Dr Fotis E. Psomopoulos

  12. Nuclear inclusions of pathogenic ataxin-1 induce oxidative stress and perturb the protein synthesis machinery

    Article • Redox Biology, May 2020, Elsevier

    Dr Fotis E. Psomopoulos

  13. Bacterial communities and potential spoilage markers of whole blue crab (Callinectes sapidus) stored under commercial simulated conditions

    Article • Food Microbiology, September 2019, Elsevier

    Dr Fotis E. Psomopoulos

  14. ELIXIR Europe on the Road to Sustainable Research Software

    Article • Biodiversity Information Science and Standards, July 2019, Pensoft Publishers

    Dr Fotis E. Psomopoulos

  15. Integrated epigenomic and transcriptomic analysis revealsTP63as a novel player in clinically aggressive chronic lymphocytic leukemia

    Article • International Journal of Cancer, January 2019, Wiley

    Dr Fotis E. Psomopoulos

  16. Data Discovery Paradigms: User Requirements and Recommendations for Data Repositories

    Article • Data Science Journal, January 2019, Ubiquity Press, Ltd.

    Dr Fotis E. Psomopoulos

  17. Stereotyped B Cell Receptor Immunoglobulins in B Cell Lymphomas

    Article • January 2019, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  18. Microbial spoilage investigation of thawed common cuttlefish (Sepia officinalis) stored at 2 °C using next generation sequencing and volatilome analysis

    Article • Food Microbiology, December 2018, Elsevier

    Dr Fotis E. Psomopoulos

  19. Eleven quick tips for finding research data

    Article • PLoS Computational Biology, April 2018, PLOS

    Dr Fotis E. Psomopoulos

  20. A Multi-metric Algorithm for Hierarchical Clustering of Same-Length Protein Sequences

    Article • January 2018, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  21. Comparative metagenomics reveals alterations in the soil bacterial community driven by N-fertilizer and Amino 16® application in lettuce

    Article • Genomics Data, December 2017, Elsevier

    Dr Fotis E. Psomopoulos

  22. De novo comparative transcriptome analysis of genes involved in fruit morphology of pumpkin cultivars with extreme size difference and development of EST-SSR markers

    Article • Gene, July 2017, Elsevier

    Dr Fotis E. Psomopoulos

  23. BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution

    Article • Bioinformatics, January 2017, Oxford University Press (OUP)

    Dr Fotis E. Psomopoulos

  24. Hermes: Seamless delivery of containerized bioinformatics workflows in hybrid cloud (HTC) environments

    Article • SoftwareX, January 2017, Elsevier

    Dr Fotis E. Psomopoulos

  25. RAPP: A Robotic-Oriented Ecosystem for Delivering Smart User Empowering Applications for Older People

    Article • International Journal of Social Robotics, June 2016, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  26. Comparative Genomics of Botrytis cinerea Strains with Differential Multi-Drug Resistance

    Article • Frontiers in Plant Science, April 2016, Frontiers

    Dr Fotis E. Psomopoulos

  27. De novo transcriptome assembly of two contrasting pumpkin cultivars

    Article • Genomics Data, March 2016, Elsevier

    Dr Fotis E. Psomopoulos

  28. A Scalable Grid Computing Framework for Extensible Phylogenetic Profile Construction

    Article • January 2016, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  29. Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis

    Article • Frontiers in Genetics, June 2015, Frontiers

    Dr Fotis E. Psomopoulos, Mr Rafael C Jimenez, Dr. Alexandre M.J.J. Bonvin

  30. Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering

    Article • International Journal on Artificial Intelligence Tools, February 2015, World Scientific Pub Co Pte Lt

    Dr Fotis E. Psomopoulos

  31. A Grid-Enabled Modular Framework for Efficient Sequence Analysis Workflows

    Article • January 2015, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  32. Algebraic Interpretations Towards Clustering Protein Homology Data

    Article • January 2014, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  33. Detection of Genomic Idiosyncrasies Using Fuzzy Phylogenetic Profiles

    Article • PLOS One, January 2013, PLOS

    Dr Fotis E. Psomopoulos

  34. MULTI-LEVEL CLUSTERING OF PHYLOGENETIC PROFILES

    Article • International Journal on Artificial Intelligence Tools, October 2012, World Scientific Pub Co Pte Lt

    Dr Fotis E. Psomopoulos

  35. The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence

    Article • Genes, May 2012, MDPI AG

    Dr Fotis E. Psomopoulos, Dr Vasilis J Promponas

  36. Multi-genome Core Pathway Identification through Gene Clustering

    Article • January 2012, Springer Science + Business Media

    Dr Fotis E. Psomopoulos

  37. Bioinformatics algorithm development for Grid environments

    Article • Journal of Systems and Software, July 2010, Elsevier

    Dr Fotis E. Psomopoulos

  38. Multi Level Clustering of Phylogenetic Profiles

    Article • January 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Fotis E. Psomopoulos

  39. A grid-enabled algorithm yields figure-eight molecular knot

    Article • Molecular Simulation, August 2009, Taylor & Francis

    Dr Fotis E. Psomopoulos

  40. Data Mining in Proteomics Using Grid Computing

    Article • IGI Global

    Dr Fotis E. Psomopoulos

  41. Data Mining in Proteomics Using Grid Computing

    Article • IGI Global

    Dr Fotis E. Psomopoulos