All Stories

  1. MLSPred-bench: Transforming electroencephalography (EEG) datasets into machine learning-ready epileptic seizure prediction benchmarks

    Article • MethodsX, December 2025, Elsevier

    Fahad Saeed

  2. HINN: Hierarchical Input Neural Network identifies multi-omics biomarker for cognitive decline

    Article • September 2025, Springer Science + Business Media

    Fahad Saeed

  3. Overcoming Site Variability in Multisite fMRI Studies: an Autoencoder Framework for Enhanced Generalizability of Machine Learning Models

    Article • Neuroinformatics, September 2025, Springer Science + Business Media

    Fahad Saeed

  4. fairGNN-WOD: Fair Graph Learning Without Complete Demographics

    Article • September 2025, International Joint Conferences on Artificial Intelligence

    Fahad Saeed

  5. RAPTOR: Reconfigurable Advanced Platform for Transdisciplinary Open Research

    Article • July 2025, ACM (Association for Computing Machinery)

    Fahad Saeed, Jason Liu

  6. Habenula alterations in resting state functional connectivity among autistic individuals

    Article • May 2025, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  7. Message from the Program Chairs

    Article • May 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  8. Machine-learning models for Alzheimer’s disease diagnosis using neuroimaging data: survey, reproducibility, and generalizability evaluation

    Article • Brain Informatics, March 2025, Springer Science + Business Media

    Fahad Saeed

  9. Utilizing Pretrained Vision Transformers and Large Language Models for Epileptic Seizure Prediction

    Article • February 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  10. Lightweight Transformer exhibits comparable performance to LLMs for Seizure Prediction: A case for light-weight models for EEG data

    Article • December 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  11. Alzheimer’s disease‐associated gene ranking using PhenoGeneRanker

    Article • Alzheimer s & Dementia, December 2024, Wiley

    Fahad Saeed

  12. TA‐RNN: an Attention‐based Time‐aware Recurrent Neural Network Architecture to Predict Progression of Alzheimer’s Disease

    Article • Alzheimer s & Dementia, December 2024, Wiley

    Fahad Saeed

  13. Alzheimer’s disease diagnosis using gray matter of T1‐weighted sMRI data and vision transformer

    Article • Alzheimer s & Dementia, December 2024, Wiley

    Fahad Saeed

  14. Predicting Individual’s Cognitive Performance Through Multi‐Omics Blood Data Using Hierarchical Input Neural Network ‐ HINN

    Article • Alzheimer s & Dementia, December 2024, Wiley

    Fahad Saeed

  15. Identifying Alzheimer’s disease-associated genes using PhenoGeneRanker

    Article • November 2024, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  16. Utilizing Pretrained Vision Transformers and Large Language Models for Epileptic Seizure Prediction

    Article • November 2024, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  17. Message from the Program Chairs

    Article • September 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  18. Predicting peptide properties from mass spectrometry data using deep attention-based multitask network and uncertainty quantification

    Article • August 2024, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  19. fairGNN-WOD: Fair Graph Learning Without Complete Demographics

    Article • August 2024, International Joint Conferences on Artificial Intelligence

    Fahad Saeed

  20. MLSPred-Bench: ML-Ready Benchmark Leveraging Seizure Detection EEG data for Predictive Models

    Article • July 2024, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  21. Pvtad: Alzheimer’s Disease Diagnosis Using Pyramid Vision Transformer Applied to White Matter of T1-Weighted Structural Mri Data

    Article • May 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  22. Robustness of ML-Based Seizure Prediction Using Noisy EEG Data From Limited Channels

    Article • April 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  23. Communication Evaluation of a Wireless 4-Channel Wearable EEG for Brain-Computer Interface (BCI) and Healthcare Applications

    Article • March 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  24. Making MS Omics Data ML-Ready: SpeCollate Protocols

    Article • January 2024, Springer Science + Business Media

    Fahad Saeed

  25. Heterogeneity Aware Distributed Machine Learning at the Wireless Edge for Health IoT Applications: An EEG Data Case Study

    Article • January 2024, Springer Science + Business Media

    Fahad Saeed

  26. ASD-GResTM: Deep Learning Framework for ASD classification using Gramian Angular Field

    Article • December 2023, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  27. Energy Efficient AI/ML based Continuous Monitoring at the Edge: ECG and EEG Case Study

    Article • December 2023, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  28. PVTAD: ALZHEIMER’S DISEASE DIAGNOSIS USING PYRAMID VISION TRANSFORMER APPLIED TO WHITE MATTER OF T1-WEIGHTED STRUCTURAL MRI DATA

    Article • November 2023, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  29. GPU-acceleration of the distributed-memory database peptide search of mass spectrometry data

    Article • Scientific Reports, October 2023, Springer Science + Business Media

    Fahad Saeed

  30. Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data

    Article • Neuroinformatics, August 2023, Springer Science + Business Media

    Fahad Saeed

  31. PPAD: a deep learning architecture to predict progression of Alzheimer’s disease

    Article • Bioinformatics, June 2023, Oxford University Press (OUP)

    Fahad Saeed

  32. Q-CASA Invited Speakers Quantum-Centric Supercomputing Strategies for Neuroscience problems: Challenges and Progress

    Article • May 2023, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  33. Description of Dissolved Organic Matter Transformational Networks at the Molecular Level

    Article • Environmental Science & Technology, February 2023, American Chemical Society (ACS)

    Fahad Saeed

  34. PPAD: A deep learning architecture to predict progression of Alzheimer’s disease

    Article • January 2023, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  35. Classification of Autism Spectrum Disorder Using rs-fMRI data and Graph Convolutional Networks

    Article • December 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  36. SPERTL: Epileptic Seizure Prediction using EEG with ResNets and Transfer Learning

    Article • September 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  37. Molecular level characterization of DOM along a freshwater-to-estuarine coastal gradient in the Florida Everglades

    Article • Aquatic Sciences, September 2022, Springer Science + Business Media

    Fahad Saeed

  38. US Renal Data System 2021 Annual Data Report: Epidemiology of Kidney Disease in the United States

    Article • American Journal of Kidney Diseases, April 2022, Elsevier

    Fahad Saeed

  39. Communication lower-bounds for distributed-memory computations for mass spectrometry based omics data

    Article • Journal of Parallel and Distributed Computing, March 2022, Elsevier

    Fahad Saeed

  40. Unsupervised Structural Classification of Dissolved Organic Matter Based on Fragmentation Pathways

    Article • Environmental Science & Technology, January 2022, American Chemical Society (ACS)

    Fahad Saeed

  41. A Easy to Use Generalized Template to Support Development of GPU Algorithms

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  42. Biomedical IoT: Enabling Technologies, Architectural Elements, Challenges, and Future Directions

    Article • IEEE Access, January 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  43. Computational CPU-GPU Template for Pre-processing of Floating-Point MS Data

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  44. Existing HPC Methods and the Communication Lower Bounds for Distributed-Memory Computations for Mass Spectrometry-Based Omics Data

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  45. Fast Spectral Pre-processing for Big MS Data

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  46. G-MSR: A GPU-Based Dimensionality Reduction Algorithm

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  47. High-Performance Computing Strategy Using Distributed-Memory Supercomputers

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  48. Introduction to Mass Spectrometry Data

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  49. Machine-Learning and the Future of HPC for MS-Based Omics

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  50. Need for High-Performance Computing for MS-Based Omics Data Analysis

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  51. Re-configurable Hardware for Computational Proteomics

    Article • January 2022, Springer Science + Business Media

    Fahad Saeed

  52. A Multi-Factorial Assessment of Functional Human Autistic Spectrum Brain Network Analysis

    Article • December 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  53. DeepCOVIDNet: Deep Convolutional Neural Network for COVID-19 Detection from Chest Radiographic Images

    Article • December 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  54. Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter

    Article • December 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  55. SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions

    Article • PLOS One, October 2021, PLOS

    Fahad Saeed

  56. Message from the Program Chairs

    Article • October 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  57. High performance computing framework for tera-scale database search of mass spectrometry data

    Article • Nature Computational Science, August 2021, Springer Science + Business Media

    Fahad Saeed

  58. TurboBC: A GPU Based Betweenness Centrality Algorithm in the Language of Linear Algebra

    Article • August 2021, ACM (Association for Computing Machinery)

    Oswaldo Artiles, Fahad Saeed

  59. Real-time peptide identification from high-throughput mass-spectrometry data

    Article • August 2021, ACM (Association for Computing Machinery)

    Fahad Saeed

  60. Search feasibility in distributed MS-proteomics big data

    Article • August 2021, ACM (Association for Computing Machinery)

    Fahad Saeed

  61. Communication-avoiding micro-architecture to compute Xcorr scores for peptide identification

    Article • August 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  62. Simulation Testbed for Evaluating Distributed Querying and Searching of Mass Spectrometry Big Data in a Network-based Infrastructure

    Article • August 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  63. A Deep Learning-Based Data Minimization Algorithm for Fast and Secure Transfer of Big Genomic Datasets

    Article • IEEE Transactions on Big Data, June 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  64. TurboBFS: GPU Based Breadth-First Search (BFS) Algorithms in the Language of Linear Algebra

    Article • June 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  65. ASD-SAENet: A Sparse Autoencoder, and Deep-Neural Network Model for Detecting Autism Spectrum Disorder (ASD) Using fMRI Data

    Article • Frontiers in Computational Neuroscience, April 2021, Frontiers

    Fahad Saeed

  66. Benchmarking mass spectrometry based proteomics algorithms using a simulated database

    Article • Network Modeling Analysis in Health Informatics and Bioinformatics, March 2021, Springer Science + Business Media

    Fahad Saeed

  67. Machine Learning Methods for Diagnosing Autism Spectrum Disorder and Attention- Deficit/Hyperactivity Disorder Using Functional and Structural MRI: A Survey

    Article • Frontiers in Neuroinformatics, January 2021, Frontiers

    Fahad Saeed

  68. Explainable and scalable machine learning algorithms for detection of autism spectrum disorder using fMRI data

    Article • January 2021, Elsevier

    Fahad Saeed

  69. Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey

    Article • IEEE Access, January 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  70. NGS-Integrator: An efficient tool for combining multiple NGS data tracks using minimum Bayes’ factors

    Article • BMC Genomics, November 2020, Springer Science + Business Media

    Fahad Saeed

  71. Federated Learning: A Survey on Enabling Technologies, Protocols, and Applications

    Article • IEEE Access, January 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  72. GPU-SFFT: A GPU based parallel algorithm for computing the Sparse Fast Fourier Transform (SFFT) of k-sparse signals

    Article • December 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  73. ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data

    Article • Frontiers in Neuroinformatics, November 2019, Frontiers

    Fahad Saeed

  74. Associations of caregiver-oncologist discordance in prognostic understanding with caregiver-reported therapeutic alliance and anxiety.

    Article • Journal of Clinical Oncology, November 2019, American Society of Clinical Oncology (ASCO)

    Fahad Saeed

  75. Efficient Shared Peak Counting in Database Peptide Search Using Compact Data Structure for Fragment-Ion Index

    Article • November 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  76. Optimized CNN-based Diagnosis System to Detect the Pneumonia from Chest Radiographs

    Article • November 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  77. Auto-ASD-Network

    Article • September 2019, ACM (Association for Computing Machinery)

    Fahad Saeed

  78. LBE: A Computational Load Balancing Algorithm for Speeding up Parallel Peptide Search in Mass-Spectrometry Based Proteomics

    Article • May 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  79. NGS‐Integrator: A Tool for Combining Information from Multiple Genome‐Wide NGS Data Tracks Using Minimum Bayes Factors

    Article • The FASEB Journal, April 2019, Wiley

    Fahad Saeed

  80. GPU-DFC: A GPU-Based Parallel Algorithm for Computing Dynamic-Functional Connectivity of Big fMRI Data

    Article • April 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  81. SLM-Transform: A Method for Memory-Efficient Indexing of Spectra for Database Search in LC-MS/MS Proteomics

    Article • January 2019, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  82. Gender and preferences for palliative care: Perceptions of efficacy.

    Article • Journal of Clinical Oncology, December 2018, American Society of Clinical Oncology (ASCO)

    Fahad Saeed

  83. Parallel Sampling-Pipeline for Indefinite Stream of Heterogeneous Graphs using OpenCL for FPGAs

    Article • December 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  84. GPU-DAEMON: GPU algorithm design, data management & optimization template for array based big omics data

    Article • Computers in Biology and Medicine, October 2018, Elsevier

    Fahad Saeed

  85. MaSS‐Simulator: A Highly Configurable Simulator for Generating MS/MS Datasets for Benchmarking of Proteomics Algorithms

    Article • PROTEOMICS, September 2018, Wiley

    Fahad Saeed

  86. A Fourier-Based Data Minimization Algorithm for Fast and Secure Transfer of Big Genomic Datasets

    Article • July 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  87. Towards quantifying psychiatric diagnosis using machine learning algorithms and big fMRI data

    Article • Big Data Analytics, May 2018, Springer Science + Business Media

    Fahad Saeed

  88. Similarity based classification of ADHD using singular value decomposition

    Article • May 2018, ACM (Association for Computing Machinery)

    Fahad Saeed

  89. Fast-GPU-PCC: A GPU-Based Technique to Compute Pairwise Pearson’s Correlation Coefficients for Time Series Data—fMRI Study

    Article • High-Throughput, April 2018, MDPI AG

    Fahad Saeed

  90. MaSS-Simulator: A highly configurable MS/MS simulator for generating test datasets for big data algorithms

    Article • April 2018, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  91. Power-efficient and highly scalable parallel graph sampling using FPGAs

    Article • December 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  92. Scalable data structure to compress next-generation sequencing files and its application to compressive genomics

    Article • November 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  93. A Hybrid MPI-OpenMP Strategy to Speedup the Compression of Big Next-Generation Sequencing Datasets

    Article • IEEE Transactions on Parallel and Distributed Systems, October 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  94. An Out-of-Core GPU based Dimensionality Reduction Algorithm for Big Mass Spectrometry Data and Its Application in Bottom-up Proteomics

    Article • August 2017, ACM (Association for Computing Machinery)

    Fahad Saeed

  95. GPU-PCC

    Article • August 2017, ACM (Association for Computing Machinery)

    Fahad Saeed

  96. A New Cryptography Algorithm to Protect Cloud-Based Healthcare Services

    Article • July 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  97. Systems-level analysis reveals selective regulation of Aqp2 gene expression by vasopressin

    Article • Scientific Reports, October 2016, Springer Science + Business Media

    Fahad Saeed

  98. Reductive Analytics on Big MS Data leads to tremendous reduction in time for peptide deduction

    Article • September 2016, Cold Spring Harbor Laboratory Press

    Fahad Saeed

  99. GPU-ArraySort: A Parallel, In-Place Algorithm for Sorting Large Number of Arrays

    Article • August 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  100. Comparative Outcomes of Carotid Artery Stent Placement and Carotid Endarterectomy in Patients with Chronic Kidney Disease and End-Stage Renal Disease

    Article • Journal of Stroke and Cerebrovascular Diseases, July 2016, Elsevier

    Fahad Saeed

  101. A parallel peptide indexer and decoy generator for crux tide using OpenMP

    Article • July 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  102. Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015)

    Article • Journal of Bioinformatics and Computational Biology, June 2016, World Scientific Pub Co Pte Lt

    Fahad Saeed

  103. Treatment Patterns and Outcomes for Ruptured and Unruptured Intracranial Aneurysms in Patients with Polycystic Kidney Disease (P1.249)

    Article • Neurology, April 2016, Wolters Kluwer Health

    Fahad Saeed

  104. MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing

    Article • Bioinformatics, January 2016, Oxford University Press (OUP)

    Fahad Saeed

  105. A Variable-Length Network Encoding Protocol for Big Genomic Data

    Article • January 2016, Springer Science + Business Media

    Fahad Saeed

  106. Data Aware Communication for Energy Harvesting Sensor Networks

    Article • January 2016, Springer Science + Business Media

    Fahad Saeed

  107. Autophagic degradation of aquaporin-2 is an early event in hypokalemia-induced nephrogenic diabetes insipidus

    Article • Scientific Reports, December 2015, Springer Science + Business Media

    Fahad Saeed

  108. Big data proteogenomics and high performance computing: Challenges and opportunities

    Article • December 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  109. Variable pharmacokinetics of extended interval tobramycin or gentamicin among critically ill patients undergoing continuous venovenous hemofiltration

    Article • Clinical Nephrology, October 2015, Dustri-Verlgag Dr. Karl Feistle

    Fahad Saeed

  110. A Parallel Algorithm for Compression of Big Next-Generation Sequencing Datasets

    Article • August 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  111. Outcomes of transient ischemic attack in maintenance dialysis patients and those with chronic kidney disease

    Article • Nephrology Dialysis Transplantation, July 2015, Oxford University Press (OUP)

    Fahad Saeed

  112. Design and Implementation of Network Transfer Protocol for Big Genomic Data

    Article • June 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  113. Acute Renal Failure Worsens In-hospital Outcomes in Patients with Intracerebral Hemorrhage

    Article • Journal of Stroke and Cerebrovascular Diseases, April 2015, Elsevier

    Fahad Saeed

  114. Foreword

    Article • Journal of Bioinformatics and Computational Biology, October 2014, World Scientific Pub Co Pte Lt

    Fahad Saeed

  115. Outcomes of Endovascular versus Intravenous Thrombolytic Treatment for Acute Ischemic Stroke in Dialysis Patients

    Article • The International Journal of Artificial Organs, September 2014, SAGE Publications

    Fahad Saeed

  116. A knowledge base of vasopressin actions in the kidney

    Article • AJP Renal Physiology, September 2014, American Physiological Society

    Fahad Saeed

  117. Acute Renal Failure Is Associated With Higher Death and Disability in Patients With Acute Ischemic Stroke

    Article • Stroke, May 2014, Wolters Kluwer Health

    Fahad Saeed

  118. Exploiting thread-level and instruction-level parallelism to cluster mass spectrometry data using multicore architectures

    Article • Network Modeling Analysis in Health Informatics and Bioinformatics, April 2014, Springer Science + Business Media

    Fahad Saeed

  119. Global analysis of the effects of the V2 receptor antagonist satavaptan on protein phosphorylation in collecting duct

    Article • AJP Renal Physiology, February 2014, American Physiological Society

    Fahad Saeed

  120. CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, January 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  121. Outcomes of Thrombolytic Treatment for Acute Ischemic Stroke in Dialysis-Dependent Patients in the United States

    Article • Journal of Stroke and Cerebrovascular Diseases, November 2013, Elsevier

    Fahad Saeed

  122. Proteome-Wide Measurement of Protein Half-Lives and Translation Rates in Vasopressin-Sensitive Collecting Duct Cells

    Article • Journal of the American Society of Nephrology, November 2013, Wolters Kluwer Health

    Fahad Saeed

  123. FOREWORD TO THE SPECIAL ISSUE ON SELECTED PAPERS FROM THE 5TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (BICoB 2013)

    Article • Journal of Bioinformatics and Computational Biology, October 2013, World Scientific Pub Co Pte Lt

    Fahad Saeed

  124. End-of-Life Care Beliefs Among Hindu Physicians in the United States

    Article • CHEST Journal, October 2013, Elsevier

    Fahad Saeed

  125. A high performance algorithm for clustering of large-scale protein mass spectrometry data using multi-core architectures

    Article • August 2013, ACM (Association for Computing Machinery)

    Fahad Saeed

  126. Quantitative phosphoproteomics implicates clusters of proteins involved in cell‐cell adhesion and transcriptional regulation in the vasopressin signaling network

    Article • The FASEB Journal, April 2013, Wiley

    Fahad Saeed

  127. PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data

    Article • Proteome Science, January 2013, Springer Science + Business Media

    Fahad Saeed

  128. Quantitative phosphoproteomics in nuclei of vasopressin-sensitive renal collecting duct cells

    Article • AJP Cell Physiology, November 2012, American Physiological Society

    Fahad Saeed

  129. CPhos: A program to calculate and visualize evolutionarily conserved functional phosphorylation sites

    Article • PROTEOMICS, October 2012, Wiley

    Fahad Saeed

  130. High performance <u>phos</u>phorylation <u>s</u>ite <u>a</u>ssignment algorithm for mass spectrometry data using multicore systems

    Article • October 2012, ACM (Association for Computing Machinery)

    Fahad Saeed

  131. An efficient algorithm for clustering of large-scale mass spectrometry data

    Article • October 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  132. Identifying protein kinase target preferences using mass spectrometry

    Article • AJP Cell Physiology, October 2012, American Physiological Society

    Fahad Saeed

  133. An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data

    Article • October 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed

  134. Dynamics of the G Protein-coupled Vasopressin V2 Receptor Signaling Network Revealed by Quantitative Phosphoproteomics

    Article • Molecular & Cellular Proteomics, February 2012, Elsevier

    Fahad Saeed

  135. A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes

    Article • Journal of Parallel and Distributed Computing, January 2012, Elsevier

    Fahad Saeed

  136. Stercoral ulcer as a cause of lower gastrointestinal (LGI) bleeding in chronic hemodialysis patients

    Article • Clinical Nephrology, January 2012, Dustri-Verlgag Dr. Karl Feistle

    Fahad Saeed

  137. NHLBI-AbDesigner: an online tool for design of peptide-directed antibodies

    Article • AJP Cell Physiology, January 2012, American Physiological Society

    Fahad Saeed

  138. Large‐scale iTRAQ‐based quantification of phosphorylation changes during vasopressin signaling

    Article • The FASEB Journal, April 2011, Wiley

    Fahad Saeed

  139. Mapping‐based temporal pattern mining algorithm (MTPMA) identifies unique clusters of phosphopeptides regulated by vasopressin in collecting duct

    Article • The FASEB Journal, April 2011, Wiley

    Fahad Saeed

  140. Blood Loss through AV Fistula: A Case Report and Literature Review

    Article • International Journal of Nephrology, January 2011, Wiley

    Fahad Saeed

  141. Lower Gastrointestinal Bleeding in Chronic Hemodialysis Patients

    Article • International Journal of Nephrology, January 2011, Hindawi Publishing Corporation

    Fahad Saeed

  142. Stroke after intravenous gamma globulin

    Article • Neurology India, January 2010, Medknow

    Fahad Saeed

  143. Comparative Evaluation of Whole Body and Hepatic Insulin Resistance Using Indices from Oral Glucose Tolerance Test in Morbidly Obese Subjects with Nonalcoholic Fatty Liver Disease

    Article • Journal of Obesity, January 2010, Hindawi Publishing Corporation

    Fahad Saeed

  144. A domain decomposition strategy for alignment of multiple biological sequences on multiprocessor platforms

    Article • Journal of Parallel and Distributed Computing, July 2009, Elsevier

    Fahad Saeed

  145. Multiple Sequence Alignment System for Pyrosequencing Reads

    Article • January 2009, Springer Science + Business Media

    Fahad Saeed

  146. Sample-Align-D: A high performance Multiple Sequence Alignment system using phylogenetic sampling and domain decomposition

    Article • April 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Fahad Saeed