All Stories

  1. Microbial platforms for sustainable aviation fuel production: Metabolic pathways, engineering constraints, and biorefinery integration

    Article • Bioresource Technology, September 2026, Elsevier

    Professor Diego Bonatto

  2. A new classification system of beer categories and styles based on large-scale data mining and self-organizing maps of beer recipes

    Article • Food and Humanity, May 2026, Elsevier

    Professor Diego Bonatto

  3. A Review of DNA Restriction‐Free Overlapping Sequence Cloning Techniques for Synthetic Biology

    Article • Biotechnology Journal, July 2025, Wiley

    Professor Diego Bonatto

  4. Biocontainment Techniques and Applications for Yeast Biotechnology

    Article • Fermentation, March 2023, MDPI AG

    Professor Diego Bonatto

  5. The multiple roles of lipid metabolism in yeast physiology during beer fermentation

    Article • Genetics and Molecular Biology, January 2022, FapUNIFESP (SciELO)

    Professor Diego Bonatto

  6. The impact of commercially available ale and lager yeast strains on the fermentative diversity of beers

    Article • July 2020, openRxiv

    Professor Diego Bonatto

  7. Does Inter-Organellar Proteostasis Impact Yeast Quality and Performance During Beer Fermentation?

    Article • Frontiers in Genetics, January 2020, Frontiers

    Professor Diego Bonatto

  8. Rethinking the role of lipids in lager yeast cells during beer fermentation from a transcriptome and systems biology perspective

    Article • January 2020, openRxiv

    Professor Diego Bonatto

  9. Characteristics of the competition among RNAs for the binding of shared miRNAs

    Article • European Journal of Cell Biology, June 2019, Elsevier

    Professor Diego Bonatto

  10. Molecular and biochemical aspects of Brettanomyces in brewing

    Article • Journal of the Institute of Brewing, January 2019, Wiley

    Professor Diego Bonatto

  11. Dynamics of DDB2-DDB1 complex under different naturally-occurring mutants in Xeroderma Pigmentosum disease

    Article • Biochimica et Biophysica Acta (BBA) - General Subjects, December 2018, Elsevier

    Professor Diego Bonatto

  12. DNA recovery from filter paper v1

    Article • November 2018, ZappyLab, Inc.

    Professor Diego Bonatto

  13. The heat shock protein 47 as a potential biomarker and a therapeutic agent in cancer research

    Article • Journal of Cancer Research and Clinical Oncology, August 2018, Springer Science + Business Media

    Professor Diego Bonatto

  14. Influence of transcriptional variants on metastasis

    Article • RNA Biology, July 2018, Taylor & Francis

    Professor Diego Bonatto

  15. Improvement of Brazilian bioethanol production – Challenges and perspectives on the identification and genetic modification of new strains of Saccharomyces cerevisiae yeasts isolated during ethanol process

    Article • Fungal Biology, June 2018, Elsevier

    Professor Diego Bonatto

  16. The second International Symposium on Fungal Stress: ISFUS

    Article • Fungal Biology, June 2018, Elsevier

    Professor Diego Bonatto

  17. Ampicillin solution 100 mg/mL v1

    Article • April 2018, ZappyLab, Inc.

    Professor Diego Bonatto

  18. Antibiotics solutions v1

    Article • April 2018, Springer Science + Business Media

    Professor Diego Bonatto

  19. Antibiotics solutions v2

    Article • April 2018, Springer Science + Business Media

    Professor Diego Bonatto

  20. Development of resazurin assay for evaluation of yeast viability and vitality in microbreweries (in Portuguese) v1

    Article • April 2018, Springer Science + Business Media

    Professor Diego Bonatto

  21. Luria-Bertani (LB) liquid medium v1

    Article • April 2018, Springer Science + Business Media

    Professor Diego Bonatto

  22. Luria-Bertani (LB) liquid medium v2

    Article • April 2018, Springer Science + Business Media

    Professor Diego Bonatto

  23. MYPG liquid medium v1

    Article • April 2018, ZappyLab, Inc.

    Professor Diego Bonatto

  24. Horizontal Gene Transfer Building Prokaryote Genomes: Genes Related to Exchange Between Cell and Environment are Frequently Transferred

    Article • Journal of Molecular Evolution, March 2018, Springer Science + Business Media

    Professor Diego Bonatto

  25. Conserved Gene Microsynteny Unveils Functional Interaction Between Protein Disulfide Isomerase and Rho Guanine-Dissociation Inhibitor Families

    Article • Scientific Reports, December 2017, Springer Science + Business Media

    Professor Diego Bonatto

  26. Landslide hazard mapping, DNA damage induced by sucrose and the biotechnology potential of sponge-associated bacteria communities

    Article • Anais da Academia Brasileira de Ciências, December 2017, FapUNIFESP (SciELO)

    Professor Diego Bonatto

  27. Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress

    Article • PLOS One, May 2017, PLOS

    Professor Diego Bonatto

  28. Accumulation of prohibitin is a common cellular response to different stressing stimuli and protects melanoma cells from ER stress and chemotherapy-induced cell death

    Article • Oncotarget, May 2017, Impact Journals, LLC

    Professor Diego Bonatto

  29. Anti-mitotic agents: Are they emerging molecules for cancer treatment?

    Article • Pharmacology & Therapeutics, May 2017, Elsevier

    Professor Diego Bonatto

  30. The role of the ubiquitin proteasome system in the memory process

    Article • Neurochemistry International, January 2017, Elsevier

    Professor Diego Bonatto

  31. Human Diseases Associated With Genome Instability

    Article • January 2016, Elsevier

    Professor Diego Bonatto

  32. Systems biology approach reveals possible evolutionarily conserved moonlighting functions for enolase

    Article • Computational Biology and Chemistry, October 2015, Elsevier

    Professor Diego Bonatto

  33. Scaffolds for Artificial miRNA Expression in Animal Cells

    Article • Human Gene Therapy Methods, October 2015, SAGE Publications

    Professor Diego Bonatto

  34. Cross-talk between redox regulation and the ubiquitin–proteasome system in mammalian cell differentiation

    Article • Biochimica et Biophysica Acta (BBA) - General Subjects, August 2015, Elsevier

    Professor Diego Bonatto

  35. Systems Chemo‐Biology and Transcriptomic Meta‐Analysis Reveal the Molecular Roles of Bioactive Lipids in Cardiomyocyte Differentiation

    Article • Journal of Cellular Biochemistry, July 2015, Wiley

    Professor Diego Bonatto

  36. A Network Flow Approach to Predict Protein Targets and Flavonoid Backbones to Treat Respiratory Syncytial Virus Infection

    Article • BioMed Research International, January 2015, Hindawi Publishing Corporation

    Professor Diego Bonatto

  37. Comparative study of the protein profiles of Sunki mandarin and Rangpur lime plants in response to water deficit

    Article • BMC Plant Biology, January 2015, Springer Science + Business Media

    Professor Diego Bonatto

  38. Overview of xeroderma pigmentosum proteins architecture, mutations and post-translational modifications

    Article • Mutation Research/Reviews in Mutation Research, January 2015, Elsevier

    Professor Diego Bonatto

  39. DATA MINING AND SYSTEMS BIOLOGY FOR IDENTIFYING KEY GENES INVOLVED IN CITRUS QUALITY

    Article • Acta Horticulturae, January 2015, International Society for Horticultural Science (ISHS)

    Professor Diego Bonatto

  40. The influence of iron on the proteomic profile of Chromobacterium violaceum

    Article • BMC Microbiology, October 2014, Springer Science + Business Media

    Professor Diego Bonatto

  41. Inhibition of HDAC increases the senescence induced by natural polyphenols in glioma cells

    Article • Biochemistry and Cell Biology, August 2014, Canadian Science Publishing

    Professor Diego Bonatto

  42. Fetal Alcohol Syndrome, Chemo-Biology and OMICS: Ethanol Effects on Vitamin Metabolism During Neurodevelopment as Measured by Systems Biology Analysis

    Article • OMICS A Journal of Integrative Biology, June 2014, Mary Ann Liebert Inc

    Professor Diego Bonatto

  43. The importance of sphingolipids and reactive oxygen species in cardiovascular development

    Article • Biology of the Cell, April 2014, Wiley

    Professor Diego Bonatto

  44. Mesenchymal stromal cells from unconventional model organisms

    Article • Cytotherapy, January 2014, Elsevier

    Professor Diego Bonatto

  45. Development and Aging: Two Opposite but Complementary Phenomena

    Article • January 2014, Karger Publishers

    Professor Diego Bonatto

  46. Sak1 kinase interacts with Pso2 nuclease in response to DNA damage induced by interstrand crosslink-inducing agents in Saccharomyces cerevisiae

    Article • Journal of Photochemistry and Photobiology B Biology, January 2014, Elsevier

    Professor Diego Bonatto

  47. New features on Pso2 protein family in DNA interstrand cross-link repair and in the maintenance of genomic integrity in Saccharomyces cerevisiae

    Article • Fungal Genetics and Biology, November 2013, Elsevier

    Professor Diego Bonatto

  48. Reviewing and Updating the Major Molecular Markers for Stem Cells

    Article • Stem Cells and Development, May 2013, Mary Ann Liebert Inc

    Professor Diego Bonatto

  49. Toxicological Effects of the Different Substances in Tobacco Smoke on Human Embryonic Development by a Systems Chemo-Biology Approach

    Article • PLOS One, April 2013, PLOS

    Professor Diego Bonatto

  50. Transcriptional profiling of BrazilianSaccharomyces cerevisiaestrains selected for semi-continuous fermentation of sugarcane must

    Article • FEMS Yeast Research, February 2013, Oxford University Press (OUP)

    Professor Diego Bonatto

  51. Combining small molecules for cell reprogramming through an interatomic analysis

    Article • Molecular BioSystems, January 2013, Royal Society of Chemistry

    Professor Diego Bonatto

  52. Back matter

    Article • Molecular BioSystems, January 2013, Royal Society of Chemistry

    Professor Diego Bonatto

  53. ATP-dependent chromatin remodeling and histone acetyltransferases in 5-FU cytotoxicity in Saccharomyces cerevisiae

    Article • Genetics and Molecular Research, January 2013, Genetics and Molecular Research

    Professor Diego Bonatto, Pr Alexandre E Escargueil

  54. Transcriptional profiling of Saccharomyces cerevisiae exposed to propolis

    Article • BMC Complementary and Alternative Medicine, October 2012, Springer Science + Business Media

    Professor Diego Bonatto

  55. Detecting fluoride using a plant species as a bioindicator, evaluating the relationship of endocrine and nerve ganglia in small intestine function, and discovering the effects of protein malnourishment and probiotic supplementation in the digestive sys...

    Article • Anais da Academia Brasileira de Ciências, September 2012, FapUNIFESP (SciELO)

    Professor Diego Bonatto

  56. Saccharomyces cerevisiae as a model system to study the response to anticancer agents

    Article • Cancer Chemotherapy and Pharmacology, August 2012, Springer Science + Business Media

    Professor Diego Bonatto, Pr Alexandre E Escargueil

  57. Protein Disulfide Isomerase Is Required for Platelet-derived Growth Factor-induced Vascular Smooth Muscle Cell Migration, Nox1 NADPH Oxidase Expression, and RhoGTPase Activation

    Article • Journal of Biological Chemistry, July 2012, American Society for Biochemistry & Molecular Biology (ASBMB)

    Professor Diego Bonatto

  58. Dis2PPI

    Article • International Journal of Knowledge Discovery in Bioinformatics, July 2012, IGI Global

    Professor Diego Bonatto

  59. Transcriptomics and systems biology analysis in identification of specific pathways involved in cacao resistance and susceptibility to witches' broom disease

    Article • Molecular BioSystems, January 2012, Royal Society of Chemistry

    Professor Diego Bonatto

  60. Senescence; an endogenous anticancer mechanism

    Article • Frontiers in Bioscience, January 2012, Frontiers in Bioscience

    Professor Diego Bonatto

  61. Mineral content is related to antioxidant and antimutagenic properties of grape juice

    Article • Genetics and Molecular Research, January 2012, Genetics and Molecular Research

    Professor Diego Bonatto

  62. Aging as a consequence of intracellular water volume and density

    Article • Medical Hypotheses, December 2011, Elsevier

    Professor Diego Bonatto

  63. New insights into the Ca2+-ATPases that contribute to cadmium tolerance in yeast

    Article • Toxicology Letters, November 2011, Elsevier

    Professor Diego Bonatto

  64. A Systems Pharmacology Analysis of Major Chemotherapy Combination Regimens Used in Gastric Cancer Treatment: Predicting Potential New Protein Targets and Drugs

    Article • Current Cancer Drug Targets, September 2011, Bentham Science Publishers

    Professor Diego Bonatto

  65. Melatonin as a central molecule connecting neural development and calcium signaling

    Article • Functional & Integrative Genomics, April 2011, Springer Science + Business Media

    Professor Diego Bonatto

  66. The developmental aging and origins of health and disease hypotheses explained by different protein networks

    Article • Biogerontology, March 2011, Springer Science + Business Media

    Professor Diego Bonatto

  67. Evaluation of heavy metal toxicity in eukaryotes using a simple functional assay

    Article • Metallomics, January 2011, Oxford University Press (OUP)

    Professor Diego Bonatto

  68. Molecular Characterization of Propolis-Induced Cell Death in Saccharomyces cerevisiae

    Article • Eukaryotic Cell, December 2010, ASM Journals

    Professor Diego Bonatto

  69. Relationship between endoplasmic reticulum- and Golgi-associated calcium homeostasis and 4-NQO-induced DNA repair in Saccharomyces cerevisiae

    Article • Archives of Microbiology, February 2010, Springer Science + Business Media

    Professor Diego Bonatto

  70. The Evolving Concept of Oxidative Stress

    Article • January 2010, Springer Science + Business Media

    Professor Diego Bonatto

  71. Polyhydroxyalkanoates production by actinobacteria isolated from soil

    Article • Canadian Journal of Microbiology, July 2009, Canadian Science Publishing

    Professor Diego Bonatto

  72. Aging defined by a chronologic–replicative protein network in Saccharomyces cerevisiae: An interactome analysis

    Article • Mechanisms of Ageing and Development, July 2009, Elsevier

    Professor Diego Bonatto

  73. Differentiation of human adipose-derived adult stem cells into neuronal tissue: Does it work?

    Article • Differentiation, March 2009, Elsevier

    Professor Diego Bonatto

  74. Antioxidant Activity and Phenolic and Mineral Content of Rose Grape Juice

    Article • Journal of Medicinal Food, February 2009, Mary Ann Liebert Inc

    Professor Diego Bonatto

  75. The role of two putative nitroreductases, Frm2p and Hbn1p, in the oxidative stress response inSaccharomyces cerevisiae

    Article • Yeast, January 2009, Wiley

    Professor Diego Bonatto

  76. Evaluation of Cytotoxic and Cytostatic Effects inSaccharomyces cerevisiaeby Poissoner Quantitative Drop Test

    Article • Basic & Clinical Pharmacology & Toxicology, January 2009, Wiley

    Professor Diego Bonatto

  77. In silico analyses of a new group of fungal and plant RecQ4-homologous proteins

    Article • Computational Biology and Chemistry, October 2008, Elsevier

    Professor Diego Bonatto

  78. The Pmr1 protein, the major yeast Ca2+-ATPase in the Golgi, regulates intracellular levels of the cadmium ion

    Article • FEMS Microbiology Letters, August 2008, Oxford University Press (OUP)

    Professor Diego Bonatto

  79. Relationships among carbohydrate intermediate metabolites and DNA damage and repair in yeast from a systems biology perspective

    Article • Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, July 2008, Elsevier

    Professor Diego Bonatto

  80. The role of the yeast ATP-binding cassette Ycf1p in glutathione and cadmium ion homeostasis during respiratory metabolism

    Article • Toxicology Letters, July 2008, Elsevier

    Professor Diego Bonatto

  81. Antioxidant Protection of Resveratrol and Catechin inSaccharomyces cerevisiae

    Article • Journal of Agricultural and Food Chemistry, June 2008, American Chemical Society (ACS)

    Professor Diego Bonatto

  82. Phenolic content and antioxidant activities of white and purple juices manufactured with organically- or conventionally-produced grapes

    Article • Food and Chemical Toxicology, December 2007, Elsevier

    Professor Diego Bonatto

  83. A systems biology analysis of protein–protein interactions between yeast superoxide dismutases and DNA repair pathways

    Article • Free Radical Biology and Medicine, August 2007, Elsevier

    Professor Diego Bonatto

  84. Replication and homologous recombination repair regulate DNA double-strand break formation by the antitumor alkylator ecteinascidin 743

    Article • Proceedings of the National Academy of Sciences, August 2007, Proceedings of the National Academy of Sciences

    Professor Diego Bonatto, Pr Alexandre E Escargueil

  85. In silico analyses of Fsf1 sequences, a new group of fungal proteins orthologous to the metazoan sideroblastic anemia-related sideroflexin family

    Article • Fungal Genetics and Biology, August 2007, Elsevier

    Professor Diego Bonatto

  86. In silico identification of a new group of specific bacterial and fungal nitroreductases-like proteins

    Article • Biochemical and Biophysical Research Communications, April 2007, Elsevier

    Professor Diego Bonatto

  87. Importance of the trans-sulfuration pathway in cancer prevention and promotion

    Article • Molecular and Cellular Biochemistry, December 2006, Springer Science + Business Media

    Professor Diego Bonatto

  88. Psoralen-sensitive mutant pso9-1 of Saccharomyces cerevisiae contains a mutant allele of the DNA damage checkpoint gene MEC3

    Article • DNA Repair, February 2006, Elsevier

    Professor Diego Bonatto

  89. The eukaryotic Pso2p/Snm1p family revisited: In Silico analyses of Pso2p A, B and Plasmodium groups

    Article • Computational Biology and Chemistry, December 2005, Elsevier

    Professor Diego Bonatto

  90. Natures Lessons to Design an Effective, Rational and Selective Drug for Soft Tissue Sarcoma Treatment: The Ecteinascidins

    Article • Drug Design Reviews - Online, November 2005, Bentham Science Publishers

    Professor Diego Bonatto

  91. In silico Identification and Analysis of New Artemis/Artemis-like Sequences from Fungal and Metazoan Species

    Article • The Protein Journal, August 2005, Springer Science + Business Media

    Professor Diego Bonatto

  92. Low cytotoxicity of ecteinascidin 743 in yeast lacking the major endonucleolytic enzymes of base and nucleotide excision repair pathways

    Article • Biochemical Pharmacology, July 2005, Elsevier

    Professor Diego Bonatto

  93. The function of Alr1p of Saccharomyces cerevisiae in cadmium detoxification: Insights from phylogenetic studies and particle-induced X-ray emission

    Article • BioMetals, February 2005, Springer Science + Business Media

    Professor Diego Bonatto

  94. A new group of plant-specific ATP-dependent DNA ligases identified by protein phylogeny, hydrophobic cluster analysis and 3-dimensional modelling

    Article • Functional Plant Biology, January 2005, CSIRO Publishing

    Professor Diego Bonatto

  95. The importance of yeast Alr proteins in cadmium detoxification as indicated by particle-induced x-ray emission and phenotypic analyses

    Article • X-Ray Spectrometry, January 2005, Wiley

    Professor Diego Bonatto

  96. Production of Short Side Chain-Poly[Hydroxyalkanoate] by a Newly Isolated Ralstonia Pickettii Strain

    Article • World Journal of Microbiology and Biotechnology, June 2004, Springer Science + Business Media

    Professor Diego Bonatto

  97. Role of PSO genes in repair of DNA damage of Saccharomyces cerevisiae

    Article • Mutation Research/Reviews in Mutation Research, November 2003, Elsevier

    Professor Diego Bonatto

  98. Diauxic shift-induced stress resistance against hydroperoxides in Saccharomyces cerevisiae is not an adaptive stress response and does not depend on functional mitochondria

    Article • Current Genetics, May 2001, Springer Science + Business Media

    Professor Diego Bonatto