All Stories

  1. Impact of Boulders and Boulder‐Induced Morphology on Oxic Volume of the Hyporheic Zone of Plane‐Bed Rivers

    Article • Water Resources Research, July 2025, American Geophysical Union (AGU)

    Dr Daniele Tonina

  2. Spatial variations of velocity and pressure fields induced by large-scale (single stalk) and small-scale (sediment) roughness elements

    Article • Advances in Water Resources, May 2025, Elsevier

    Dr Daniele Tonina

  3. Morphology‐Induced Thermal Refuge in a Gravel‐Bed River

    Article • Hydrological Processes, April 2025, Wiley

    Dr Daniele Tonina

  4. Mathematical Modeling of Laboratory-Scale Solute Transport in Porous Media

    Article • March 2025, Copernicus GmbH

    Dr Daniele Tonina

  5. A semi-analytical approach to characterize the effects of unsteadiness and dune migration on microplastics fate

    Article • January 2025, Copernicus GmbH

    Dr Daniele Tonina

  6. iFLOW: A Framework and GUI to Quantify Effective Thermal Diffusivity and Advection in Permeable Materials From Temperature Time Series

    Article • Water Resources Research, November 2024, American Geophysical Union (AGU)

    Dr Daniele Tonina

  7. Pro+: Automated protrusion and critical shear stress estimates from 3D point clouds of gravel beds

    Article • Earth Surface Processes, April 2024, Wiley

    Dr Daniele Tonina

  8. The role of water management and river morphology on stranding pool formation

    Article • Ecological Engineering, November 2023, Elsevier

    Dr Daniele Tonina

  9. The Role of Riverine Bed Roughness, Egg Pocket Location, and Egg Pocket Permeability on Salmonid Redd‐Induced Hyporheic Flows

    Article • Water Resources Research, October 2023, American Geophysical Union (AGU)

    Dr Daniele Tonina

  10. Measuring porous media velocity fields and grain bed architecture with a quantitative PLIF-based technique

    Article • Measurement Science and Technology, September 2023, Institute of Physics Publishing

    Dr Daniele Tonina

  11. The role of riverine bed roughness, egg pocket location, and egg pocket permeability on salmonid redd-induced hyporheic flows

    Article • July 2023, Authorea, Inc.

    Dr Daniele Tonina

  12. The role of riverine bed roughness, egg pocket location, and egg pocket permeability on salmonid redd-induced hyporheic flows

    Article • June 2023, Authorea, Inc.

    Dr Daniele Tonina

  13. Effect of Surface Hydraulics and Salmon Redd Size on Redd‐Induced Hyporheic Exchange

    Article • Water Resources Research, June 2023, American Geophysical Union (AGU)

    Dr Daniele Tonina

  14. Impact of flow regulation on stream morphology and habitat quality distribution

    Article • The Science of The Total Environment, June 2023, Elsevier

    Dr Daniele Tonina

  15. Evaluating Apple iPhone LiDAR measurements of topography and roughness elements in coarse bedded streams

    Article • Journal of Ecohydraulics, April 2023, Taylor & Francis

    Dr Daniele Tonina

  16. Spatial patterns of diffusive greenhouse gas emissions from cascade hydropower reservoirs

    Article • Journal of Hydrology, April 2023, Elsevier

    Dr Daniele Tonina

  17. Identifying failure mechanisms of native riparian forest regeneration in a variable-width floodplain using a spatially-distributed riparian forest recruitment model

    Article • Ecological Engineering, February 2023, Elsevier

    Dr Daniele Tonina

  18. Flood Flows as a Natural Tool of River Restoration

    Article • January 2023, Elsevier

    Dr Daniele Tonina

  19. Flood Flows as a Natural Tool of River Restoration

    Article • January 2023, Elsevier

    Dr Daniele Tonina

  20. Effect of surface hydraulics and salmon redd size on redd induced hyporheic exchange

    Article • November 2022, Wiley

    Dr Daniele Tonina

  21. Predicting nitrous oxide emissions through riverine networks

    Article • The Science of The Total Environment, October 2022, Elsevier

    Dr Daniele Tonina

  22. Climate Change Shrinks and Fragments Salmon Habitats in a Snow‐Dependent Region

    Article • Geophysical Research Letters, June 2022, American Geophysical Union (AGU)

    Dr Daniele Tonina

  23. Experimentally Mapping Water Surface Elevation, Velocity, and Pressure Fields of an Open Channel Flow Around a Stalk

    Article • Geophysical Research Letters, April 2022, American Geophysical Union (AGU)

    Dr Daniele Tonina

  24. Dam cascade unveils sediment methylmercury dynamics in reservoirs

    Article • Water Research, April 2022, Elsevier

    Dr Daniele Tonina

  25. Testing the effective-discharge paradigm in gravel-bed river restoration

    Article • Geomorphology, April 2022, Elsevier

    Dr Daniele Tonina

  26. LPMLEn–A Frequency Domain Method to Estimate Vertical Streambed Fluxes and Sediment Thermal Properties in Semi‐Infinite and Bounded Domains

    Article • Water Resources Research, March 2022, American Geophysical Union (AGU)

    Dr Daniele Tonina

  27. Nitrous Oxide Emissions From Drying Streams and Rivers

    Article • Geophysical Research Letters, December 2021, American Geophysical Union (AGU)

    Dr Daniele Tonina

  28. Spatiotemporal Dynamics of Nitrous Oxide Emission Hotspots in Heterogeneous Riparian Sediments

    Article • Water Resources Research, December 2021, American Geophysical Union (AGU)

    Dr Daniele Tonina

  29. Bacterial communities in cascade reservoirs along a large river

    Article • Limnology and Oceanography, October 2021, Wiley

    Dr Daniele Tonina

  30. Some (fish might) like it hot: Habitat quality and fish growth from past to future climates

    Article • The Science of The Total Environment, September 2021, Elsevier

    Dr Daniele Tonina

  31. Global riverine nitrous oxide emissions: The role of small streams and large rivers

    Article • The Science of The Total Environment, July 2021, Elsevier

    Dr Daniele Tonina

  32. A scalable hybrid model to predict riverine nitrous oxide emissions from the reach to the global scale

    Article • March 2021, Copernicus GmbH

    Dr Daniele Tonina

  33. Groundwater-surface water exchange: A New Graphical User Interface for temperature time-series analysis

    Article • March 2021, Copernicus GmbH

    Dr Daniele Tonina

  34. Quantifying vertical streambed fluxes around woody structures using high-resolution streambed temperature measurements.

    Article • March 2021, Copernicus GmbH

    Dr Daniele Tonina

  35. Detecting multi‐scale riverine topographic variability and its influence on Chinook salmon habitat selection

    Article • Earth Surface Processes, February 2021, Wiley

    Dr Daniele Tonina

  36. A Biologically Friendly, Low‐Cost, and Scalable Method to Map Permeable Media Architecture and Interstitial Flow

    Article • Geophysical Research Letters, January 2021, American Geophysical Union (AGU)

    Dr Daniele Tonina

  37. Post-wildfire riparian forest recovery processes along a regulated river corridor

    Article • Forest Ecology and Management, December 2020, Elsevier

    Dr Daniele Tonina

  38. Riparian vegetation model to predict seedling recruitment and restoration alternatives

    Article • Journal of Environmental Management, December 2020, Elsevier

    Dr Daniele Tonina

  39. The biophysical basis of thermal tolerance in fish eggs

    Article • Proceedings of the Royal Society B Biological Sciences, October 2020, Royal Society Publishing

    Dr Daniele Tonina

  40. Local and Reach‐Scale Hyporheic Flow Response From Boulder‐Induced Geomorphic Changes

    Article • Water Resources Research, October 2020, American Geophysical Union (AGU)

    Dr Daniele Tonina

  41. Power law scaling model predicts N2O emissions along the Upper Mississippi River basin

    Article • The Science of The Total Environment, August 2020, Elsevier

    Dr Daniele Tonina

  42. Evaluating the performance of topobathymetric LiDAR to support multi‐dimensional flow modelling in a gravel‐bed mountain stream

    Article • Earth Surface Processes, July 2020, Wiley

    Dr Daniele Tonina

  43. Some like it slow: a bioenergetic evaluation of habitat quality for juvenile Chinook salmon in the Lemhi River, Idaho

    Article • Canadian Journal of Fisheries and Aquatic Sciences, July 2020, Canadian Science Publishing

    Dr Daniele Tonina

  44. Coupled reservoir-river systems: Lessons from an integrated aquatic ecosystem assessment

    Article • Journal of Environmental Management, April 2020, Elsevier

    Dr Daniele Tonina

  45. Hydropower reservoirs on the upper Mekong River modify nutrient bioavailability downstream

    Article • National Science Review, February 2020, Oxford University Press (OUP)

    Dr Daniele Tonina

  46. Tracking nitrogen pollution sources in plain watersheds by combining high-frequency water quality monitoring with tracing dual nitrate isotopes

    Article • Journal of Hydrology, February 2020, Elsevier

    Dr Daniele Tonina

  47. BIOLOGICAL TURBULENCE INTENSITY INDEX FOR PACIFIC LAMPREY PASSAGE OF ARTIFICIAL FISHWAYS

    Article • September 2019, Research Publishing Services

    Dr Daniele Tonina

  48. DEVELOPMENT OF AN INTEGRATED MODELING TO PREDICT CHANGES IN SPATIAL AND TEMPORAL HABITAT FOR NATURAL AND REGULATED FLOWS

    Article • September 2019, Research Publishing Services

    Dr Daniele Tonina

  49. IMPACTS OF FLOWS ON RIPARIAN COTTONWOOD AND WILLOW SEEDLING RECRUITMENT IN THE SOUTH FORK BOISE RIVER, USA

    Article • September 2019, Research Publishing Services

    Dr Daniele Tonina

  50. Particle Seeded Grains to Identify Highly Irregular Solid Boundaries and Simplify PIV Measurements

    Article • Frontiers in Earth Science, July 2019, Frontiers

    Dr Daniele Tonina

  51. A novel fiber optic system to map dissolved oxygen concentrations continuously within submerged sediments

    Article • Journal of Applied Water Engineering and Research, May 2019, Taylor & Francis

    Dr Daniele Tonina

  52. Nitrous oxide from streams and rivers: A review of primary biogeochemical pathways and environmental variables

    Article • Earth-Science Reviews, April 2019, Elsevier

    Dr Daniele Tonina

  53. On the role of spatial resolution on snow estimates using a process‐based snow model across a range of climatology and elevation

    Article • Hydrological Processes, February 2019, Wiley

    Dr Daniele Tonina

  54. An ecohydraulics virtual watershed: Integrating physical and biological variables to quantify aquatic habitat quality

    Article • Ecohydrology, December 2018, Wiley

    Dr Daniele Tonina

  55. Mapping river bathymetries: Evaluating topobathymetric LiDAR survey

    Article • Earth Surface Processes, November 2018, Wiley

    Dr Daniele Tonina

  56. Role of temporal resolution of meteorological inputs for process-based snow modelling

    Article • Hydrological Processes, August 2018, Wiley

    Dr Daniele Tonina

  57. Hyporheic Source and Sink of Nitrous Oxide

    Article • Water Resources Research, July 2018, American Geophysical Union (AGU)

    Dr Daniele Tonina

  58. Dam operations may improve aquatic habitat and offset negative effects of climate change

    Article • Journal of Environmental Management, May 2018, Elsevier

    Dr Daniele Tonina

  59. Spatial and Temporal Dynamics of Dissolved Oxygen Concentrations and Bioactivity in the Hyporheic Zone

    Article • Water Resources Research, March 2018, American Geophysical Union (AGU)

    Dr Daniele Tonina

  60. Seeing through porous media: An experimental study for unveiling interstitial flows

    Article • Hydrological Processes, January 2018, Wiley

    Dr Daniele Tonina

  61. A hierarchical modelling framework for assessing physical and biochemical characteristics of a regulated river

    Article • Ecological Modelling, January 2018, Elsevier

    Dr Daniele Tonina

  62. Monitoring Streambed Scour/Deposition Under Nonideal Temperature Signal and Flood Conditions

    Article • Water Resources Research, December 2017, Wiley

    Dr Daniele Tonina

  63. Was That Assumption Necessary? Reconsidering Boundary Conditions for Analytical Solutions to Estimate Streambed Fluxes

    Article • Water Resources Research, November 2017, Wiley

    Dr Daniele Tonina

  64. Context-dependent responses to turbulence for an anguilliform swimming fish, Pacific lamprey, during passage of an experimental vertical-slot weir

    Article • Ecological Engineering, September 2017, Elsevier

    Dr Daniele Tonina

  65. Aquatic habitat response to climate-driven hydrologic regimes and water operations in a montane reservoir in the Pacific Northwest, USA

    Article • Aquatic Sciences, May 2017, Springer Science + Business Media

    Dr Daniele Tonina

  66. Modeling Surface–Subsurface Exchange of Heat and Nutrients

    Article • May 2017, Wiley

    Dr Daniele Tonina

  67. Role of surface and subsurface processes in scaling N 2 O emissions along riverine networks

    Article • Proceedings of the National Academy of Sciences, April 2017, Proceedings of the National Academy of Sciences

    Dr Daniele Tonina

  68. Estimation of daily stream water temperatures with a Bayesian regression approach

    Article • Hydrological Processes, March 2017, Wiley

    Dr Daniele Tonina

  69. Video: HYporheic Flow Through a Triangular Dune

    Article • November 2016, American Physical Society (APS)

    Dr Daniele Tonina

  70. Controls on Nitrous Oxide Emissions from the Hyporheic Zones of Streams

    Article • Environmental Science & Technology, October 2016, American Chemical Society (ACS)

    Dr Daniele Tonina

  71. Does streambed heterogeneity matter for hyporheic residence time distribution in sand-bedded streams?

    Article • Advances in Water Resources, October 2016, Elsevier

    Dr Daniele Tonina

  72. Effects of water velocity, turbulence and obstacle length on the swimming capabilities of adult Pacific lamprey

    Article • Fisheries Management and Ecology, July 2016, Wiley

    Dr Daniele Tonina

  73. Effects of habitat quality and ambient hyporheic flows on salmon spawning site selection

    Article • Journal of Geophysical Research Biogeosciences, May 2016, American Geophysical Union (AGU)

    Dr Daniele Tonina

  74. Mixing interfaces, fluxes, residence times and redox conditions of the hyporheic zones induced by dune-like bedforms and ambient groundwater flow

    Article • Advances in Water Resources, February 2016, Elsevier

    Dr Daniele Tonina

  75. Effect of transect location, transect spacing and interpolation methods on river bathymetry accuracy

    Article • Earth Surface Processes, January 2016, Wiley

    Dr Daniele Tonina

  76. Floodplain persistence and dynamic-equilibrium conditions in a canyon environment

    Article • Geomorphology, December 2015, Elsevier

    Dr Daniele Tonina

  77. Habitat connectivity as a metric for aquatic microhabitat quality: application to Chinook salmon spawning habitat

    Article • Ecohydrology, November 2015, Wiley

    Dr Daniele Tonina

  78. Does small-bodied salmon spawning activity enhance streambed mobility?

    Article • Water Resources Research, September 2015, American Geophysical Union (AGU)

    Dr Daniele Tonina

  79. Modeling the influence of salmon spawning on hyporheic exchange of marine-derived nutrients in gravel stream beds

    Article • Canadian Journal of Fisheries and Aquatic Sciences, August 2015, Canadian Science Publishing

    Dr Daniele Tonina

  80. REI: riparian ecosystem index to assess the impact of hydrologic regime changes on riparian ecosystems

    Article • Ecohydrology, March 2015, Wiley

    Dr Daniele Tonina

  81. Effects of upstream reservoir regulation on the hydrological regime and fish habitats of the Lijiang River, China

    Article • Ecological Engineering, March 2015, Elsevier

    Dr Daniele Tonina

  82. Breakthrough curve moments scaling in hyporheic exchange

    Article • Water Resources Research, February 2015, American Geophysical Union (AGU)

    Dr Daniele Tonina

  83. Benthic Uptake Rate due to Hyporheic Exchange: The Effects of Streambed Morphology for Constant and Sinusoidally Varying Nutrient Loads

    Article • Water, January 2015, MDPI AG

    Dr Daniele Tonina

  84. Development of a spatially-distributed hydroecological model to simulate cottonwood seedling recruitment along rivers

    Article • Journal of Environmental Management, December 2014, Elsevier

    Dr Daniele Tonina

  85. Multi-scale streambed topographic and discharge effects on hyporheic exchange at the stream network scale in confined streams

    Article • Journal of Hydrology, November 2014, Elsevier

    Dr Daniele Tonina

  86. One-dimensional and two-dimensional hydrodynamic modeling derived flow properties: impacts on aquatic habitat quality predictions

    Article • Earth Surface Processes, September 2014, Wiley

    Dr Daniele Tonina

  87. A hydrologic model demonstrates nitrous oxide emissions depend on streambed morphology

    Article • Geophysical Research Letters, August 2014, American Geophysical Union (AGU)

    Dr Daniele Tonina

  88. Effects of bathymetric lidar errors on flow properties predicted with a multi-dimensional hydraulic model

    Article • Journal of Geophysical Research Earth Surface, March 2014, American Geophysical Union (AGU)

    Dr Daniele Tonina

  89. The effects of discharge and slope on hyporheic flow in step-pool morphologies

    Article • Hydrological Processes, February 2014, Wiley

    Dr Daniele Tonina

  90. Quantifying streambed deposition and scour from stream and hyporheic water temperature time series

    Article • Water Resources Research, January 2014, American Geophysical Union (AGU)

    Dr Daniele Tonina

  91. Quantifying the importance of daily stream water temperature fluctuations on the hyporheic thermal regime: Implication for dissolved oxygen dynamics

    Article • Journal of Hydrology, December 2013, Elsevier

    Dr Daniele Tonina

  92. Modeling the effects of pulsed versus chronic sand inputs on salmonid spawning habitat in a low-gradient gravel-bed river

    Article • Earth Surface Processes, November 2013, Wiley

    Dr Daniele Tonina

  93. Spatiotemporal variability of hyporheic exchange through a pool-riffle-pool sequence

    Article • Water Resources Research, November 2013, American Geophysical Union (AGU)

    Dr Daniele Tonina

  94. Effect of cross-section interpolated bathymetry on 2D hydrodynamic model results in a large river

    Article • Earth Surface Processes, July 2013, Wiley

    Dr Daniele Tonina

  95. Bed stability in unconfined gravel bed mountain streams: With implications for salmon spawning viability in future climates

    Article • Journal of Geophysical Research Earth Surface, July 2013, American Geophysical Union (AGU)

    Dr Daniele Tonina

  96. Hydraulic Modelling Approaches for Ecohydraulic Studies: 3D, 2D, 1D and Non-Numerical Models

    Article • June 2013, Wiley

    Dr Daniele Tonina

  97. Comparison of hydromorphological assessment methods: Application to the Boise River, USA

    Article • Journal of Hydrology, June 2013, Elsevier

    Dr Daniele Tonina

  98. Effects of stream morphodynamics on hyporheic zone thermal regime

    Article • Water Resources Research, April 2013, American Geophysical Union (AGU)

    Dr Daniele Tonina

  99. Potential effects of climate change on streambed scour and risks to salmonid survival in snow-dominated mountain basins

    Article • Hydrological Processes, February 2013, Wiley

    Dr Daniele Tonina

  100. Solutions for the diurnally forced advection-diffusion equation to estimate bulk fluid velocity and diffusivity in streambeds from temperature time series

    Article • Water Resources Research, January 2013, American Geophysical Union (AGU)

    Dr Daniele Tonina

  101. Surface water and streambed sediment interaction

    Article • November 2012, Taylor & Francis

    Dr Daniele Tonina

  102. Morphodynamic controls on redox conditions and on nitrogen dynamics within the hyporheic zone: Application to gravel bed rivers with alternate‐bar morphology

    Article • Journal of Geophysical Research Atmospheres, September 2012, American Geophysical Union (AGU)

    Dr Daniele Tonina

  103. A semianalytical three-dimensional process-based model for hyporheic nitrogen dynamics in gravel bed rivers

    Article • Water Resources Research, November 2011, American Geophysical Union (AGU)

    Dr Daniele Tonina

  104. Effects of stream discharge, alluvial depth and bar amplitude on hyporheic flow in pool-riffle channels

    Article • Water Resources Research, August 2011, American Geophysical Union (AGU)

    Dr Daniele Tonina

  105. Semianalytical analysis of hyporheic flow induced by alternate bars

    Article • Water Resources Research, July 2010, American Geophysical Union (AGU)

    Dr Daniele Tonina

  106. A three-dimensional model for analyzing the effects of salmon redds on hyporheic exchange and egg pocket habitat

    Article • Canadian Journal of Fisheries and Aquatic Sciences, December 2009, Canadian Science Publishing

    Dr Daniele Tonina

  107. Remote Sensing of Channels and Riparian Zones with a Narrow-Beam Aquatic-Terrestrial LIDAR

    Article • Remote Sensing, November 2009, MDPI AG

    Dr Daniele Tonina

  108. Hyporheic Exchange in Mountain Rivers I: Mechanics and Environmental Effects

    Article • Geography Compass, May 2009, Wiley

    Dr Daniele Tonina

  109. Hyporheic Exchange in Mountain Rivers II: Effects of Channel Morphology on Mechanics, Scales, and Rates of Exchange

    Article • Geography Compass, May 2009, Wiley

    Dr Daniele Tonina

  110. Hydrological response to timber harvest in northern Idaho: implications for channel scour and persistence of salmonids

    Article • Hydrological Processes, August 2008, Wiley

    Dr Daniele Tonina

  111. Effects of pore-scale dispersion, degree of heterogeneity, sampling size, and source volume on the concentration moments of conservative solutes in heterogeneous formations

    Article • Advances in Water Resources, February 2008, Elsevier

    Dr Daniele Tonina

  112. Probability density function of non-reactive solute concentration in heterogeneous porous formations

    Article • Journal of Contaminant Hydrology, October 2007, Elsevier

    Dr Daniele Tonina

  113. Hyporheic exchange in gravel bed rivers with pool-riffle morphology: Laboratory experiments and three-dimensional modeling

    Article • Water Resources Research, January 2007, American Geophysical Union (AGU)

    Dr Daniele Tonina