All Stories

  1. Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach

    Article • PLoS Computational Biology, January 2022, PLOS

    Dr Attila Csikasz-Nagy

  2. Neurospora crassa as a model organism to explore the interconnected network of the cell cycle and the circadian clock

    Article • Fungal Genetics and Biology, October 2014, Elsevier

    Dr Attila Csikasz-Nagy

  3. Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico

    Article • Molecular Systems Biology, April 2014, EMBO

    Dr Attila Csikasz-Nagy

  4. An Insulin-to-Insulin Regulatory Network Orchestrates Phenotypic Specificity in Development and Physiology

    Article • PLoS Genetics, March 2014, PLOS

    Dr Attila Csikasz-Nagy

  5. A network approach to mixing delegates at meetings

    Article • eLife, February 2014, eLife

    Dr Attila Csikasz-Nagy

  6. Circadian rhythms synchronize mitosis in Neurospora crassa

    Article • Proceedings of the National Academy of Sciences, January 2014, Proceedings of the National Academy of Sciences

    Dr Attila Csikasz-Nagy

  7. Projecting cell polarity into the next decade

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, September 2013, Royal Society Publishing

    Dr Attila Csikasz-Nagy

  8. Cooperation and competition in the dynamics of tissue architecture during homeostasis and tumorigenesis

    Article • Seminars in Cancer Biology, August 2013, Elsevier

    Dr Attila Csikasz-Nagy

  9. Dynamics of SIN Asymmetry Establishment

    Article • PLoS Computational Biology, July 2013, PLOS

    Dr Attila Csikasz-Nagy

  10. Spatial segregation of polarity factors into distinct cortical clusters is required for cell polarity control

    Article • Nature Communications, May 2013, Springer Science + Business Media

    Dr Masamitsu Sato, Dr Attila Csikasz-Nagy

  11. Cell Cycle

    Article • January 2013, Springer Science + Business Media

    Dr Attila Csikasz-Nagy

  12. In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae

    Article • BMC Systems Biology, January 2013, Springer Science + Business Media

    Dr Attila Csikasz-Nagy

  13. Linkers of Cell Polarity and Cell Cycle Regulation in the Fission Yeast Protein Interaction Network

    Article • PLoS Computational Biology, October 2012, PLOS

    Dr Masamitsu Sato, Dr Attila Csikasz-Nagy

  14. The Cell Cycle Switch Computes Approximate Majority

    Article • Scientific Reports, September 2012, Springer Science + Business Media

    Dr Attila Csikasz-Nagy

  15. Prosperity is associated with instability in dynamical networks

    Article • Journal of Theoretical Biology, April 2012, Elsevier

    Dr Attila Csikasz-Nagy

  16. Transcriptional Regulation Is a Major Controller of Cell Cycle Transition Dynamics

    Article • PLoS ONE, January 2012, PLOS

    Dr Attila Csikasz-Nagy

  17. “Keystone Species” of Molecular Interaction Networks

    Article • January 2012, Elsevier

    Dr Attila Csikasz-Nagy

  18. Combining Game Theory and Graph Theory to Model Interactions between Cells in the Tumor Microenvironment

    Article • January 2012, Springer Science + Business Media

    Dr Attila Csikasz-Nagy

  19. The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation

    Article • Nature Communications, January 2012, Springer Science + Business Media

    Dr Attila Csikasz-Nagy

  20. Molecular Network Dynamics of Cell Cycle Control: Transitions to Start and Finish

    Article • January 2011, Springer Science + Business Media

    Dr Attila Csikasz-Nagy

  21. Response dynamics of phosphorelays suggest their potential utility in cell signalling

    Article • Journal of The Royal Society Interface, August 2010, Royal Society Publishing

    Dr Attila Csikasz-Nagy

  22. Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex

    Article • FEBS Journal, December 2009, Wiley

    Dr Attila Csikasz-Nagy

  23. Regulating the total level of a signaling protein can vary its dynamics in a range from switch like ultrasensitivity to adaptive responses

    Article • FEBS Journal, June 2009, Wiley

    Dr Attila Csikasz-Nagy

  24. Minimum Criteria for DNA Damage-Induced Phase Advances in Circadian Rhythms

    Article • PLoS Computational Biology, May 2009, PLOS

    Dr Attila Csikasz-Nagy

  25. Computational systems biology of the cell cycle

    Article • Briefings in Bioinformatics, March 2009, Oxford University Press (OUP)

    Dr Attila Csikasz-Nagy

  26. Studying Irreversible Transitions in a Model of Cell Cycle Regulation

    Article • Electronic Notes in Theoretical Computer Science, March 2009, Elsevier

    Dr Attila Csikasz-Nagy

  27. Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation

    Article • Molecular Systems Biology, January 2009, EMBO

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  28. Analysis of a budding yeast cell cycle model using the shapes of local sensitivity functions

    Article • International Journal of Chemical Kinetics, November 2008, Wiley

    Dr Attila Csikasz-Nagy

  29. Stochastic Petri Net extension of a yeast cell cycle model

    Article • Journal of Theoretical Biology, October 2008, Elsevier

    Dr Attila Csikasz-Nagy

  30. Adaptive dynamics with a single two-state protein

    Article • Journal of The Royal Society Interface, August 2008, Royal Society Publishing

    Dr Attila Csikasz-Nagy

  31. Spatial controls for growth zone formation during the fission yeast cell cycle

    Article • Yeast, January 2008, Wiley

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  32. Computational Analysis of Mammalian Cell Division Gated by a Circadian Clock: Quantized Cell Cycles and Cell Size Control

    Article • Journal of Biological Rhythms, December 2007, SAGE Publications

    Dr Attila Csikasz-Nagy

  33. Irreversible cell-cycle transitions are due to systems-level feedback

    Article • Nature Cell Biology, July 2007, Springer Science + Business Media

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  34. Modeling the septation initiation network (SIN) in fission yeast cells

    Article • Current Genetics, March 2007, Springer Science + Business Media

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  35. Analysis of a Generic Model of Eukaryotic Cell-Cycle Regulation

    Article • Biophysical Journal, June 2006, Elsevier

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  36. Integrative Analysis of Cell Cycle Control in Budding Yeast

    Article • Molecular Biology of the Cell, May 2004, American Society for Cell Biology (ASCB)

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  37. The dynamics of cell cycle regulation

    Article • BioEssays, November 2002, Wiley

    Professor John J Tyson, Dr Attila Csikasz-Nagy

  38. Modeling the fission yeast cell cycle: Quantized cycle times in wee1 − cdc25Δ mutant cells

    Article • Proceedings of the National Academy of Sciences, July 2000, Proceedings of the National Academy of Sciences

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  39. Kinetic Analysis of a Molecular Model of the Budding Yeast Cell Cycle

    Article • Molecular Biology of the Cell, January 2000, American Society for Cell Biology (ASCB)

    Dr Attila Csikasz-Nagy

  40. Finishing the Cell Cycle

    Article • Journal of Theoretical Biology, July 1999, Elsevier

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  41. Model scenarios for evolution of the eukaryotic cell cycle

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, December 1998, Royal Society Publishing

    Dr Attila Csikasz-Nagy

  42. Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions

    Article • Biophysical Chemistry, May 1998, Elsevier

    Dr Attila Csikasz-Nagy, Professor John J Tyson

  43. Reverse Engineering Models of Cell Cycle Regulation

    Article • Springer Science + Business Media

    Dr Attila Csikasz-Nagy