All Stories

  1. Noncoding RNAs and Splicing Variants Associated with Nitrogen Stress Tolerance: Insights into Growth and Development in Potato
  2. Predictive role of noncoding RNAs in growth-development and stress mechanisms of Amaranthus hypochondriacus
  3. Predictive Role of Cluster Bean (Cyamopsis tetragonoloba) Derived miRNAs in Human and Cattle Health
  4. An Improved Machine Learning-Based Approach to Assess the Microbial Diversity in Major North Indian River Ecosystems
  5. ASLncR: a novel computational tool for prediction of abiotic stress-responsive long non-coding RNAs in plants
  6. ASmiR: a machine learning framework for prediction of abiotic stress–specific miRNAs in plants
  7. Prediction of protein–protein interactions between anti-CRISPR and CRISPR-Cas using machine learning technique
  8. Deciphering the mechanism of anhydrobiosis in the entomopathogenic nematode Heterorhabditis indica through comparative transcriptomics
  9. Identification of efficient learning classifiers for discrimination of coding and non-coding RNAs in plant species
  10. Evaluation of Models for Utilization in Genomic Prediction of Agronomic Traits in the Louisiana Sugarcane Breeding Program
  11. A comparative analysis of amino acid encoding schemes for the prediction of flexible length linear B-cell epitopes
  12. Single trait versus principal component based association analysis for flowering related traits in pigeonpea
  13. Whole-genome sequence analysis of Bipolaris sorokiniana infecting wheat in India and characterization of ToxA gene in different isolates as pathogenicity determinants
  14. Evolutionary and functional characterisation of glutathione peroxidases showed splicing mediated stress responses in Maize
  15. ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with Pseudo K-Tuple Nucleotide Compositional Features
  16. Metagenomics study in aquatic resource management: Recent trends, applied methodologies and future needs
  17. Exploring microbiome from sediments of River Ganga using a metagenomic approach
  18. Chemotactic factor inducing Interleukin-8 (IL8) gene is transcriptionally elevated in experimental enterotoxaemia in goats caused by Clostridium perfringens type D
  19. mLoc-mRNA: predicting multiple sub-cellular localization of mRNAs using random forest algorithm coupled with feature selection via elastic net
  20. Draft genome sequencing of the foxglove aphid (Aulacorthum solani Kaltenbach), a vector of potato viruses, provides insights on virulence genes
  21. Deciphering Genotype-By-Environment Interaction for Target Environmental Delineation and Identification of Stable Resistant Sources Against Foliar Blast Disease of Pearl Millet
  22. SNPRBb: economically important trait specific SNP resources of buffalo (Bubalus bubalis)
  23. Publisher Correction: miRNALoc: predicting miRNA subcellular localizations based on principal component scores of physico-chemical properties and pseudo compositions of di-nucleotides
  24. Genome sequence analysis provides insights on genomic variation and late blight resistance genes in potato somatic hybrid (parents and progeny)
  25. Web-SpikeSegNet: Deep Learning Framework for Recognition and Counting of Spikes From Visual Images of Wheat Plants
  26. Comparative Transcriptome Analysis of Iron and Zinc Deficiency in Maize (Zea mays L.)
  27. Computational insights into RNAi-based therapeutics for foot and mouth disease of Bos taurus
  28. Comparative study of different non-parametric genomic selection methods under diverse genetic architecture
  29. Metagenomic Analysis Reveals Bacterial and Fungal Diversity and Their Bioremediation Potential From Sediments of River Ganga and Yamuna in India
  30. Metagenome analysis from the sediment of river Ganga and Yamuna: In search of beneficial microbiome
  31. miRNALoc: predicting miRNA subcellular localizations based on principal component scores of physico-chemical properties and pseudo compositions of di-nucleotides
  32. Inferring Relationship of Blood Metabolic Changes and Average Daily Gain With Feed Conversion Efficiency in Murrah Heifers: Machine Learning Approach
  33. Identification and characterization of trait-specific SNPs using ddRAD sequencing in water buffalo
  34. Physiological and genome-wide RNA-sequencing analyses identify candidate genes in a nitrogen-use efficient potato cv. Kufri Gaurav
  35. Computational analysis of SNPs and INDELs in cluster bean cultivars involved in multiple trait expression
  36. Chromosome scale reference genome of Cluster bean (Cyamopsis tetragonoloba(L.) Taub.)
  37. Identification and characterization of circular RNAs regulating genes responsible for drought stress tolerance in chickpea and soybean
  38. SpikeSegNet-a deep learning approach utilizing encoder-decoder network with hourglass for spike segmentation and counting in wheat plant from visual imaging
  39. Transcriptome profiling of differentially expressed genes in cytoplasmic male-sterile line and its fertility restorer line in pigeon pea (Cajanus cajan L.)
  40. Extrapolating the effect of non-synonymous SNP in bread wheat HSP16.9B gene: a molecular modelling and dynamics study
  41. Comparative transcriptome analysis reveals the genetic basis of coat color variation in Pashmina goat
  42. Evaluating the performance of sequence encoding schemes and machine learning methods for splice sites recognition
  43. MicroRNA-related markers associated with corpus luteum tropism in buffalo (Bubalus bubalis)
  44. HRGPred: Prediction of herbicide resistant genes with k-mer nucleotide compositional features and support vector machine
  45. funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model
  46. Transcriptome analysis reveals interplay between hormones, ROS metabolism and cell wall biosynthesis for drought-induced root growth in wheat
  47. Genome-wide identification and characterization of lncRNAs and miRNAs in cluster bean ( Cyamopsis tetragonoloba )
  48. In silico site-directed mutagenesis of neutralizing mAb 4C4 and analysis of its interaction with G-H loop of VP1 to explore its therapeutic applications against FMD
  49. GinMicrosatDb: a genome-wide microsatellite markers database for sesame (Sesamum indicum L.)
  50. nifPred: Proteome-Wide Identification and Categorization of Nitrogen-Fixation Proteins of Diaztrophs Based on Composition-Transition-Distribution Features Using Support Vector Machine
  51. Structural, Functional, and Evolutionary Characterization of Major Drought Transcription Factors Families in Maize
  52. Unravelling the epigenomic interactions between parental inbreds resulting in an altered hybrid methylome in pigeonpea
  53. ir-HSP: Improved Recognition of Heat Shock Proteins, Their Families and Sub-types Based On g-Spaced Di-peptide Features and Support Vector Machine
  54. Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement
  55. RNAseq revealed the important gene pathways controlling adaptive mechanisms under waterlogged stress in maize
  56. expression of drought genes in corn
  57. Identification, Characterization, and Functional Validation of Drought-responsive MicroRNAs in Subtropical Maize Inbreds
  58. Identification and characterization of a grain micronutrient-related OsFRO2 rice gene ortholog from micronutrient-rich little millet (Panicum sumatrense)
  59. Genomic Selection for Drought Tolerance Using Genome-Wide SNPs in Maize
  60. DIRProt: a computational approach for discriminating insecticide resistant proteins from non-resistant proteins
  61. Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC
  62. Genomewide Expression and Functional Interactions of Genes under Drought Stress in Maize
  63. Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle
  64. Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea
  65. Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier
  66. Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Carthamus tinctorius L.) through Maximization Strategy
  67. A computational approach for prediction of donor splice sites with improved accuracy
  68. Genome Wide Single Locus Single Trait, Multi-Locus and Multi-Trait Association Mapping for Some Important Agronomic Traits in Common Wheat (T. aestivum L.)
  69. Identification of Novel Abiotic Stress Proteins in Triticum aestivum Through Functional Annotation of Hypothetical Proteins
  70. Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features
  71. Mapping QTLs for Salt Tolerance in Rice (Oryza sativa L.) by Bulked Segregant Analysis of Recombinant Inbred Lines Using 50K SNP Chip
  72. Comparative transcriptome analysis of female and hermaphrodite flower buds in bitter gourd (Momordica charantiaL.) by RNA sequencing
  73. Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice
  74. Genome-wide analysis and identification of abiotic stress responsive transcription factor family genes and miRNAs in bread wheat (Triticumaestivum L.): Genomic study of bread wheat
  75. Molecular modeling and dynamics study of nonsynonymous SNP in bread wheat HSP16.9B gene
  76. Prediction of donor splice sites using random forest with a new sequence encoding approach
  77. The complete mitochondrial genome of the Asian stinging catfish, Heteropneustes fossilis (Siluriformes, Heteropneustidae) and its comparison with other related fish species
  78. Detection of biennial rhythm and estimation of repeatability in mango (Mangifera indicaL.)
  79. Performance evaluation of neural network, support vector machine and random forest for prediction of donor splice sites in rice
  80. The complete mitochondrial genome of theAnabas testudineus(Perciformes, Anabantidae) and its comparison with other related fish species
  81. Extrapolation of Inter Domain Communications and Substrate Binding Cavity of Camel HSP70 1A: A Molecular Modeling and Dynamics Simulation Study
  82. Exploration of new drug-like inhibitors for serine/threonine protein phosphatase 5 ofPlasmodium falciparum: a docking and simulation study
  83. Evaluation of random forest regression for prediction of breeding value from genomewide SNPs
  84. Identification of a diverse mini-core panel of Indian rice germplasm based on genotyping using microsatellite markers
  85. Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India
  86. Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)
  87. Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India
  88. Inheritance of gynoecism and genetics of yield and yield contributing traits through generation mean analysis in bitter gourd
  89. A statistical approach for 5′ splice site prediction using short sequence motifs and without encoding sequence data
  90. Determination of window size and identification of suitable method for prediction of donor splice sites in rice (Oryza sativa) genome
  91. Functional Screening and Molecular Characterization of Halophilic and Halotolerant Bacteria by 16S rRNA Gene Sequence Analysis
  92. An approach to the development of a core set of germplasm using a mixture of qualitative and quantitative data
  93. Detection of novel key residues of MnSOD enzyme and its role in salinity management across species
  94. Application of Gibbs sampling methodology for identification of transcription factor binding sites in MADS box family genes inArabidopsis thaliana
  95. In silicoidentification of late blight susceptibility genes inSolanum tuberosum
  96. Genetic Diversity Analysis in a Novel Set of Restorer Lines of Pearl Millet [Pennisetum glaucum(L.) R. Br] Using SSR Markers
  97. Computational approaches, databases and tools for in silico motif discovery
  98. shRNAPred (version 1.0): An open source and standalone software for short hairpin RNA (shRNA) prediction
  99. A comparative performance of clustering procedures for mixture of qualitative and quantitative data – an application to black gram
  100. Features of 5'-splice-site efficiency derived from disease-causing mutations and comparative genomics
  101. Extensive in silico analysis of NF1 splicing defects uncovers determinants for splicing outcome upon 5′ splice-site disruption
  102. Chronic renal insufficiency among Asian Indians with type 2 diabetes: I. Role of RAAS gene polymorphisms
  103. II. Serotonin receptor gene polymorphisms and their association with tardive dyskinesia among schizophrenia patients from North India
  104. Genetic susceptibility to tardive dyskinesia in chronic schizophrenia subjects: III. Lack of association of CYP3A4 and CYP2D6 gene polymorphisms
  105. Genetic susceptibility to Tardive Dyskinesia in chronic schizophrenia subjects: I. Association of CYP1A2 gene polymorphism