All Stories

  1. Cell shapes decode molecular phenotypes in image-based spatial proteomics

    Article • May 2025, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  2. Multimodal cell maps as a foundation for structural and functional genomics

    Article • Nature, April 2025, Springer Science + Business Media

    Anthony J Cesnik

  3. SubCell: Proteome-aware vision foundation models for microscopy capture single-cell biology

    Article • December 2024, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  4. Dissecting autonomous enzymatic variability in single cells

    Article • October 2024, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  5. Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes

    Article • Annual Review of Biomedical Data Science, August 2024, Annual Reviews

    Anthony J Cesnik

  6. Bento: a toolkit for subcellular analysis of spatial transcriptomics data

    Article • Genome Biology, April 2024, Springer Science + Business Media

    Anthony J Cesnik

  7. Author Correction: Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

    Article • Nature, August 2022, Springer Science + Business Media

    Anthony J Cesnik

  8. Bento: A toolkit for subcellular analysis of spatial transcriptomics data

    Article • June 2022, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  9. Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms

    Article • Journal of Proteome Research, March 2022, American Chemical Society (ACS)

    Dr. Yasset Perez-Riverol, DR Juan Antonio Vizcaino, Anthony J Cesnik

  10. The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells

    Article • Science, January 2022, American Association for the Advancement of Science

    Anthony J Cesnik

  11. MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses

    Article • Journal of Proteome Research, January 2022, American Chemical Society (ACS)

    Anthony J Cesnik

  12. Illuminating Non-genetic Cellular Heterogeneity with Imaging-Based Spatial Proteomics

    Article • Trends in Cancer, April 2021, Elsevier

    Anthony J Cesnik

  13. Spatiotemporal dissection of the cell cycle with single-cell proteogenomics

    Article • Nature, February 2021, Springer Science + Business Media

    Anthony J Cesnik

  14. Spritz: A Proteogenomic Database Engine

    Article • Journal of Proteome Research, September 2020, American Chemical Society (ACS)

    Anthony J Cesnik

  15. Author Correction: Analysis of the Human Protein Atlas Image Classification competition

    Article • Nature Chemical Biology, August 2020, Springer Science + Business Media

    Anthony J Cesnik

  16. Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder

    Article • Molecular Systems Biology, August 2020, Springer Science + Business Media

    Anthony J Cesnik

  17. Spritz: A Proteogenomic Database Engine

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  18. Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line

    Article • Journal of Proteome Research, February 2020, American Chemical Society (ACS)

    Anthony J Cesnik

  19. Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder

    Article • January 2020, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  20. Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition

    Article • Nature Chemical Biology, January 2020, Springer Science + Business Media

    Anthony J Cesnik

  21. Publisher Correction: The Author File: Sündüz Keleş

    Article • Nature Chemical Biology, December 2019, Springer Science + Business Media

    Anthony J Cesnik

  22. Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition

    Article • Nature Chemical Biology, December 2019, Springer Science + Business Media

    Anthony J Cesnik

  23. Analysis of the Human Protein Atlas Image Classification competition

    Article • Nature Chemical Biology, November 2019, Springer Science + Business Media

    Anthony J Cesnik

  24. Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS

    Article • RNA, July 2019, Cold Spring Harbor Laboratory Press

    Anthony J Cesnik

  25. Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy

    Article • Journal of Proteome Research, September 2018, American Chemical Society (ACS)

    Anthony J Cesnik

  26. HyPR-MS for Multiplexed Discovery of MALAT1, NEAT1, and NORAD lncRNA Protein Interactomes

    Article • Journal of Proteome Research, July 2018, American Chemical Society (ACS)

    Anthony J Cesnik

  27. Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers

    Article • Translational Oncology, June 2018, Elsevier

    Anthony J Cesnik

  28. ProForma: a Standard Proteoform Notation.

    Article • Journal of Proteome Research, February 2018, American Chemical Society (ACS)

    DR Juan Antonio Vizcaino, Anthony J Cesnik

  29. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families

    Article • Analytical Chemistry, December 2017, American Chemical Society (ACS)

    Anthony J Cesnik

  30. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families

    Article • Journal of Proteome Research, December 2017, American Chemical Society (ACS)

    Anthony J Cesnik

  31. Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys

    Article • BMC Genomics, November 2017, Springer Science + Business Media

    Anthony J Cesnik

  32. Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database

    Article • Journal of Proteome Research, October 2017, American Chemical Society (ACS)

    Anthony J Cesnik

  33. Correction to “Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements”

    Article • Journal of Proteome Research, June 2017, American Chemical Society (ACS)

    Anthony J Cesnik

  34. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation

    Article • Annual Review of Analytical Chemistry, June 2016, Annual Reviews

    Anthony J Cesnik

  35. HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae

    Article • Genomics, June 2016, Elsevier

    Prahlad K Rao, Anthony J Cesnik

  36. Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements

    Article • Journal of Proteome Research, March 2016, American Chemical Society (ACS)

    Anthony J Cesnik

  37. Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy

    Article • Journal of Proteome Research, January 2016, American Chemical Society (ACS)

    Anthony J Cesnik

  38. Electrochemical Synthesis of Binary and Ternary Niobium-Containing Oxide Electrodes Using the p-Benzoquinone/Hydroquinone Redox Couple

    Article • Langmuir, August 2015, American Chemical Society (ACS)

    Anthony J Cesnik