All Stories

  1. Airborne eDNA captures three decades of ecosystem biodiversity

    Article • Nature Communications, December 2025, Springer Science + Business Media

    Dr Andreas Sjodin

  2. Early-life gut and oral microbiota development: a multi-niche study including mother-partner-infant triads

    Article • BMC Microbiology, November 2025, Springer Science + Business Media

    Dr Andreas Sjodin

  3. First detection of Sindbis virus in wild birds in Nigeria

    Article • Scientific Reports, July 2025, Springer Science + Business Media

    Dr Andreas Sjodin

  4. Corrigendum to “Biological amplification of low frequency mutations unravels laboratory culture history of the bio-threat agent Francisella tularensis” [Forensic Sci. Int.: Genet. 45 (2020) 102230]

    Article • Forensic Science International Genetics, July 2024, Elsevier

    Dr Andreas Sjodin

  5. Completed genome and emergence scenario of the multidrug-resistant nosocomial pathogen Staphylococcus epidermidis ST215

    Article • BMC Microbiology, June 2024, Springer Science + Business Media

    Dr Andreas Sjodin

  6. Hybrid capture-based next-generation sequencing of new and old world Orthohantavirus strains and wild-type Puumala isolates from humans and bank voles

    Article • Journal of Clinical Virology, June 2024, Elsevier

    Dr Andreas Sjodin

  7. Nanometa live: a user-friendly application for real-time metagenomic data analysis and pathogen identification

    Article • Bioinformatics, February 2024, Oxford University Press (OUP)

    Dr Andreas Sjodin

  8. Novel strains of Culex flavivirus and Hubei chryso-like virus 1 from the Anopheles mosquito in western Kenya

    Article • Virus Research, January 2024, Elsevier

    Dr Andreas Sjodin

  9. Bipolar Biogeographical Distribution of Parafrancisella Bacteria Carried by the Ciliate Euplotes

    Article • Microbial Ecology, July 2023, Springer Science + Business Media

    Dr Andreas Sjodin

  10. Targeting the gut-lung axis by synbiotic feeding to infants in a randomized controlled trial

    Article • BMC Biology, February 2023, Springer Science + Business Media

    Dr Andreas Sjodin

  11. Association between Legionella species and humic substances during early summer in the northern Baltic Sea

    Article • Frontiers in Marine Science, January 2023, Frontiers

    Dr Andreas Sjodin

  12. Genomic characterization of Francisella tularensis and other diverse Francisella species from complex samples

    Article • PLOS One, October 2022, PLOS

    Dr Andreas Sjodin

  13. Bacterial composition in Swedish raw drinking water reveals three major interacting ubiquitous metacommunities

    Article • MicrobiologyOpen, September 2022, Wiley

    Dr Andreas Sjodin

  14. Co-Occurrence of Francisella, Spotted Fever Group Rickettsia, and Midichloria in Avian-Associated Hyalomma rufipes

    Article • Microorganisms, July 2022, MDPI AG

    Dr Andreas Sjodin

  15. Clinical and genomic characterisation of a fatal Puumala orthohantavirus case with low levels of neutralising antibodies

    Article • Infectious Diseases, June 2022, Taylor & Francis

    Dr Andreas Sjodin

  16. Alphacoronavirus in a Daubenton’s Myotis Bat (Myotis daubentonii) in Sweden

    Article • Viruses, March 2022, MDPI AG

    Dr Andreas Sjodin

  17. FlexTaxD: flexible modification of taxonomy databases for improved sequence classification

    Article • Bioinformatics, September 2021, Oxford University Press (OUP)

    Dr Andreas Sjodin

  18. Complete Genome Sequence of Francisella sp. Strain LA11-2445 (FDC406), a Novel Francisella Species Isolated from a Human Skin Lesion

    Article • Microbiology Resource Announcements, January 2021, ASM Journals

    Dr Andreas Sjodin

  19. Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis

    Article • Microorganisms, January 2021, MDPI AG

    Dr Andreas Sjodin, Dr J. Gustavo Ramirez-Paredes

  20. Community-led, integrated, reproducible multi-omics with anvi’o

    Article • Nature Microbiology, December 2020, Springer Science + Business Media

    Dr Andreas Sjodin

  21. Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China

    Article • Microbiology Resource Announcements, November 2020, ASM Journals

    Dr Andreas Sjodin

  22. Complete Genome Sequence of Francisella tularensis subsp. holarctica Strain A271_1 (FDC408), Isolated from a Eurasian Beaver (Castor fiber)

    Article • Microbiology Resource Announcements, November 2020, ASM Journals

    Dr Andreas Sjodin

  23. A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences

    Article • PLOS One, September 2020, PLOS

    Dr Andreas Sjodin, Erik JOhansson

  24. Complete Genome Sequence of Francisella halioticida Type Strain DSM 23729 (FSC1005)

    Article • Microbiology Resource Announcements, September 2020, ASM Journals

    Dr Andreas Sjodin

  25. Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis

    Article • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, March 2020, Society for General Microbiology

    Dr Andreas Sjodin, Dr J. Gustavo Ramirez-Paredes

  26. Biological amplification of low frequency mutations unravels laboratory culture history of the bio-threat agent Francisella tularensis

    Article • Forensic Science International Genetics, March 2020, Elsevier

    Dr Andreas Sjodin

  27. doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows

    Article • BMC Bioinformatics, October 2019, Springer Science + Business Media

    Dr Andreas Sjodin

  28. A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis

    Article • PLOS One, March 2019, PLOS

    Erik JOhansson, Dr Andreas Sjodin

  29. doepipeline: a systematic approach for optimizing multi-level and multi-step data processing workflows

    Article • December 2018, Cold Spring Harbor Laboratory Press

    Dr Andreas Sjodin

  30. Administration of ferrous sulfate drops has significant effects on the gut microbiota of iron-sufficient infants: a randomised controlled study

    Article • Gut, October 2018, BMJ

    Dr Andreas Sjodin

  31. Temporal and long-term gut microbiota variation in allergic disease: A prospective study from infancy to school age

    Article • Allergy, October 2018, Wiley

    Dr Andreas Sjodin

  32. Accounting for Bacterial Overlap Between Raw Water Communities and Contaminating Sources Improves the Accuracy of Signature-Based Microbial Source Tracking

    Article • Frontiers in Microbiology, October 2018, Frontiers

    Dr Andreas Sjodin

  33. Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest

    Article • Soil Biology and Biochemistry, October 2018, Elsevier

    Dr Andreas Sjodin

  34. A New Species of the γ-Proteobacterium Francisella, F. adeliensis Sp. Nov., Endocytobiont in an Antarctic Marine Ciliate and Potential Evolutionary Forerunner of Pathogenic Species

    Article • Microbial Ecology, September 2018, Springer Science + Business Media

    Dr Andreas Sjodin

  35. Bioconda: sustainable and comprehensive software distribution for the life sciences

    Article • Nature Chemical Biology, July 2018, Springer Science + Business Media

    Dr. Yasset Perez-Riverol, Saket Choudhary, Dr Andreas Sjodin

  36. Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells

    Article • mBio, June 2018, ASM Journals

    Dr Andreas Sjodin, Niilo Kaldalu, Dr Frédéric Goormaghtigh

  37. Galleria mellonella Reveals Niche Differences Between Highly Pathogenic and Closely Related Strains of Francisella spp.

    Article • Frontiers in Cellular and Infection Microbiology, June 2018, Frontiers

    Dr Andreas Sjodin

  38. Predators and nutrient availability favor protozoa-resisting bacteria in aquatic systems

    Article • Scientific Reports, May 2018, Springer Science + Business Media

    Dr Andreas Sjodin

  39. Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression

    Article • Cancer Research, April 2016, American Association for Cancer Research (AACR)

    Dr Andreas Sjodin

  40. The Plant Genome Integrative Explorer Resource: PlantGen IE .org

    Article • New Phytologist, July 2015, Wiley

    Dr Andreas Sjodin

  41. Scaffolding of a bacterial genome using MinION nanopore sequencing

    Article • Scientific Reports, July 2015, Nature

    Dr Andreas Sjodin

  42. Genomic analyses of Francisella tularensis strains confirm disease transmission from drinking water sources, Turkey, 2008, 2009 and 2012

    Article • Eurosurveillance, May 2015, European Centre for Disease Control and Prevention (ECDC)

    Dr Andreas Sjodin

  43. Phylogeographical pattern of Francisella tularensis in a nationwide outbreak of tularaemia in Norway, 2011

    Article • Eurosurveillance, May 2015, European Centre for Disease Control and Prevention (ECDC)

    Dr Andreas Sjodin

  44. Complete Genome Sequence of Francisella guangzhouensis Strain 08HL01032 T , Isolated from Air-Conditioning Systems in China

    Article • Genome Announcements, March 2015, ASM Journals

    Dr Andreas Sjodin

  45. Complete Genome Sequence of Francisella endociliophora Strain FSC1006, Isolated from a Laboratory Culture of the Marine Ciliate Euplotes raikovi

    Article • Genome Announcements, November 2014, ASM Journals

    Dr Andreas Sjodin

  46. Francisella tularensis subsp. tularensis Group A.I, United States

    Article • Emerging Infectious Diseases, May 2014, Centers for Disease Control and Prevention (CDC)

    Dr Anders F Johansson, Dr Andreas Sjodin

  47. CanSNPer: a hierarchical genotype classifier of clonal pathogens

    Article • Bioinformatics, February 2014, Oxford University Press (OUP)

    Dr Andreas Sjodin

  48. Eight New Genomes and Synthetic Controls Increase the Accessibility of Rapid Melt-MAMA SNP Typing of Coxiella burnetii

    Article • PLOS One, January 2014, PLOS

    Dr Andreas Sjodin

  49. The Need for High-Quality Whole-Genome Sequence Databases in Microbial Forensics

    Article • Biosecurity and Bioterrorism Biodefense Strategy Practice and Science, September 2013, Mary Ann Liebert Inc

    Dr Andreas Sjodin

  50. Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177

    Article • Standards in Genomic Sciences, August 2013, Springer Science + Business Media

    Dr Andreas Sjodin

  51. Trans-Golgi Network Localized ECHIDNA/Ypt Interacting Protein Complex Is Required for the Secretion of Cell Wall Polysaccharides in Arabidopsis

    Article • The Plant Cell, July 2013, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  52. Indigenous Infection withFrancisella tularensis holarcticain The Netherlands

    Article • Case Reports in Infectious Diseases, January 2013, Hindawi Publishing Corporation

    Dr Andreas Sjodin

  53. An improved multiple-locus variable-number of tandem repeat analysis (MLVA) for the fish pathogen Francisella noatunensis using capillary electrophoresis

    Article • BMC Veterinary Research, January 2013, Springer Science + Business Media

    Dr Andreas Sjodin

  54. The phylogeographic pattern of F rancisella tularensis in S weden indicates a...

    Article • Environmental Microbiology, December 2012, Wiley

    Dr Anders F Johansson, Dr Andreas Sjodin

  55. Genome Sequence of Francisella tularensis subspecies holarctica Strain FSC200, Isolated from a Child with Tularemia

    Article • Journal of Bacteriology, December 2012, ASM Journals

    Dr Anders F Johansson, Dr Andreas Sjodin

  56. Real-time PCR assays targeting unique DNA sequences of fish-pathogenic Francisella noatunensis subspecies noatunensis and orientalis

    Article • Diseases of Aquatic Organisms, November 2012, Inter-Research Science Center

    Dr Andreas Sjodin

  57. The Distribution of Francisella-like Bacteria Associated with Coastal Waters in Norway

    Article • Microbial Ecology, February 2012, Springer Science + Business Media

    Dr Andreas Sjodin

  58. Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Dr Anders F Johansson, Dr Andreas Sjodin

  59. Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays

    Article • BMC Microbiology, January 2012, Springer Science + Business Media

    Dr Anders F Johansson, Dr Andreas Sjodin

  60. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Andreas Sjodin

  61. Components Acting Downstream of Short Day Perception Regulate Differential Cessation of Cambial Activity and Associated Responses in Early and Late Clones of Hybrid Poplar

    Article • Plant Physiology, September 2010, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  62. Whole-Genome Sequencing Reveals Distinct Mutational Patterns in Closely Related Laboratory and Naturally Propagated Francisella tularensis Strains

    Article • PLOS One, July 2010, PLOS

    Dr Andreas Sjodin

  63. Analysis of global changes in gene expression during activity-dormancy cycle in hybrid aspen apex

    Article • Plant Biotechnology, January 2010, Japanese Society for Plant Cell and Molecular Biology

    Dr Andreas Sjodin

  64. A unique program for cell death in xylem fibers ofPopulusstem

    Article • The Plant Journal, April 2009, Wiley

    Dr Andreas Sjodin

  65. Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus

    Article • Tree Genetics & Genomes, March 2009, Springer Science + Business Media

    Dr Andreas Sjodin

  66. ThePopulusGenome Integrative Explorer (PopGenIE): a new resource for exploring thePopulusgenome

    Article • New Phytologist, March 2009, Wiley

    Dr Andreas Sjodin

  67. The Control of Autumn Senescence in European Aspen

    Article • Plant Physiology, February 2009, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  68. Global expression profiling in leaves of free-growing aspen

    Article • BMC Plant Biology, January 2008, Springer Science + Business Media

    Dr Andreas Sjodin

  69. A cross-species transcriptomics approach to identify genes involved in leaf development

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Dr Andreas Sjodin

  70. Growth-phase-dependent gene expression profiling of poplar (Populus alba × Populus tremula var. glandulosa) suspension cells

    Article • Physiologia Plantarum, December 2007, Wiley

    Dr Andreas Sjodin

  71. Orthogonal projections to latent structures as a strategy for microarray data normalization

    Article • BMC Bioinformatics, June 2007, Springer Science + Business Media

    Dr Andreas Sjodin

  72. Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks

    Article • The Plant Journal, April 2007, Wiley

    Dr Andreas Sjodin

  73. UPSC-BASE -Populustranscriptomics online

    Article • The Plant Journal, December 2006, Wiley

    Dr Andreas Sjodin

  74. The genetics and genomics of the drought response inPopulus

    Article • The Plant Journal, November 2006, Wiley

    Dr Andreas Sjodin

  75. MASQOT-GUI: spot quality assessment for the two-channel microarray platform

    Article • Bioinformatics, August 2006, Oxford University Press (OUP)

    Dr Andreas Sjodin

  76. Abundantly and Rarely Expressed Lhc Protein Genes Exhibit Distinct Regulation Patterns in Plants

    Article • Plant Physiology, February 2006, American Society of Plant Biologists (ASPB)

    Dr Andreas Sjodin

  77. Article • BMC Plant Biology, January 2006, Springer Science + Business Media

    Dr Andreas Sjodin

  78. Molecular targets of elevated [CO 2 ] in leaves and stems of Populus deltoides : implications for future tree growth and carbon sequestration

    Article • Functional Plant Biology, January 2006, CSIRO Publishing

    Dr Andreas Sjodin

  79. The transcriptome of Populus in elevated CO2

    Article • New Phytologist, May 2005, Wiley

    Dr Andreas Sjodin

  80. Article • BMC Bioinformatics, January 2005, Springer Science + Business Media

    Dr Andreas Sjodin

  81. Article • Genome Biology, January 2004, Springer Science + Business Media

    Dr Andreas Sjodin