All Stories

  1. Self-supervised plasma proteomic representations for prospective disease prediction across varying protein availability

    Article • September 2026, openRxiv

    Dr Amy Baxter

  2. CytoGate-Bench: an LLM benchmark for cross-panel cell gating in cytometry

    Article • August 2026, openRxiv

    Dr Amy Baxter

  3. Continuous expression of TOX safeguards exhausted CD8 T cell epigenetic fate

    Article • Science Immunology, March 2025, American Association for the Advancement of Science

    Dr Amy Baxter

  4. TET2 regulates early and late transitions in exhausted CD8 + T cell differentiation and limits CAR T cell function

    Article • Science Advances, November 2024, American Association for the Advancement of Science

    Dr Amy Baxter

  5. TET2 regulates early and late transitions in exhausted CD8+T-cell differentiation and limits CAR T-cell function

    Article • March 2024, Cold Spring Harbor Laboratory Press

    Dr Amy Baxter

  6. In vitro modeling of CD8 + T cell exhaustion enables CRISPR screening to reveal a role for BHLHE40

    Article • Science Immunology, August 2023, American Association for the Advancement of Science

    Dr Amy Baxter

  7. The SWI/SNF chromatin remodeling complexes BAF and PBAF differentially regulate epigenetic transitions in exhausted CD8+ T cells

    Article • Immunity, June 2023, Elsevier

    Dr Amy Baxter

  8. Efficient engineering of human and mouse primary cells using peptide-assisted genome editing

    Article • Nature Biotechnology, April 2023, Springer Science + Business Media

    Dr Amy Baxter

  9. Shared and distinct biological circuits in effector, memory and exhausted CD8+ T cells revealed by temporal single-cell transcriptomics and epigenetics

    Article • Nature Immunology, October 2022, Springer Science + Business Media

    Dr Amy Baxter

  10. Proteomic profiling of MIS-C patients indicates heterogeneity relating to interferon gamma dysregulation and vascular endothelial dysfunction

    Article • Nature Communications, December 2021, Springer Science + Business Media

    Dr Amy Baxter

  11. Immune checkpoint expression on HIV-specific CD4+ T cells and response to their blockade are dependent on lineage and function

    Article • September 2021, Cold Spring Harbor Laboratory Press

    Dr Amy Baxter

  12. Signaling through FcγRIIA and the C5a-C5aR pathway mediates platelet hyperactivation in COVID-19

    Article • May 2021, Cold Spring Harbor Laboratory Press

    Dr Amy Baxter

  13. Deep immune profiling of MIS-C demonstrates marked but transient immune activation compared with adult and pediatric COVID-19

    Article • Science Immunology, March 2021, American Association for the Advancement of Science

    Dr Amy Baxter

  14. In vivo CD8+ T cell CRISPR screening reveals control by Fli1 in infection and cancer

    Article • Cell, March 2021, Elsevier

    Dr Amy Baxter

  15. Deep Immune Profiling of MIS-C demonstrates marked but transient immune activation compared to adult and pediatric COVID-19

    Article • September 2020, Cold Spring Harbor Laboratory Press

    Dr Amy Baxter

  16. Deep immune profiling of COVID-19 patients reveals distinct immunotypes with therapeutic implications

    Article • Science, September 2020, American Association for the Advancement of Science

    Dr Amy Baxter

  17. Comprehensive mapping of immune perturbations associated with severe COVID-19

    Article • Science Immunology, July 2020, American Association for the Advancement of Science

    Dr Amy Baxter

  18. Deep immune profiling of COVID-19 patients reveals patient heterogeneity and distinct immunotypes with implications for therapeutic interventions

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Amy Baxter

  19. Single-cell characterization and quantification of translation-competent viral reservoirs in treated and untreated HIV infection

    Article • PLoS Pathogens, February 2019, PLOS

    Dr Amy Baxter

  20. Multiparametric characterization of rare HIV-infected cells using an RNA-flow FISH technique

    Article • Nature Protocols, September 2017, Nature

    Dr Amy Baxter

  21. Visualizing HIV viral translation-competent reservoirs.

    Article • Cell Host & Microbe, September 2016, Elsevier

    Dr Amy Baxter

  22. Tumor-necrosis factor is a master of T cell exhaustion

    Article • Nature Immunology, April 2016, Nature

    Dr Amy Baxter

  23. High-throughput detection of miRNAs and gene-specific mRNA at the single-cell level by flow cytometry

    Article • Nature Communications, December 2014, Nature

    Dr Amy Baxter

  24. Macrophage Infection via Selective Capture of HIV-1-Infected CD4+ T Cells

    Article • Cell Host & Microbe, December 2014, Elsevier

    Dr Andres Finzi, Dr Amy Baxter

  25. Efficient macrophage infection by phagocytosis of dying HIV-1 -infected CD4+T cells

    Article • Retrovirology, January 2011, Springer Science + Business Media

    Dr Amy Baxter