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  1. Prediction and Causality of Functional MRI and Synthetic Signal Using a Zero-Shot Time-Series Foundation Model

    Article • January 2026, Springer Science + Business Media

    Dr. Alessandro Crimi

  2. We explore how Alzheimer’s proteins spread through the brain using richer network models.

    Article • July 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  3. Modeling the Spread of Misfolded Proteins in Alzheimer’s Disease using Higher-Order Simplicial Complex Contagion

    Article • February 2025, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  4. "Reservoir Computing for Stroke Brain Network: A Novel Directed Graph Convolutional Approach"

    Article • IEEE Access, January 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  5. Exploiting Graph Convolutional Networks for Insightful Classification and Explanation of Traumatic Brain Injury

    Article • IEEE Access, January 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  6. Graph Attention Networks for Detecting Epilepsy from EEG Signals Using Accessible Hardware in Low-Resource Settings

    Article • IEEE Open Journal of Engineering in Medicine and Biology, January 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  7. Using Portable Consumer-Grade EEG Data as a Neurophysiological Biomarker for Cognitive Impairment Assessment in real-world scenarios through Machine Learning

    Article • November 2024, Center for Open Science

    Dr. Alessandro Crimi

  8. Real-time augmented reality surgical planning for brain tumor removal with machine learning and brain connectivity

    Article • November 2024, Center for Open Science

    Dr. Alessandro Crimi

  9. Studying how EEG and fNIRS work together to analyze brain connectivity networks.

    Article • Journal of Computational Science, October 2024, Elsevier

    Dr. Alessandro Crimi

  10. Neural networks associated with eye movements in congenital blindness

    Article • European Journal of Neuroscience, July 2024, Wiley

    Dr. Alessandro Crimi, Prof. Emiliano Ricciardi

  11. Deep Learning for Grading Gliomas by Analyzing and Quantifying Tumor Microenvironment Features

    Article • Journal of Imaging Informatics in Medicine, June 2024, Springer Science + Business Media

    Dr. Alessandro Crimi

  12. Explainable graph neural networks for EEG classification and seizure detection in epileptic patients

    Article • May 2024, Center for Open Science

    Dr. Alessandro Crimi

  13. Reshaped functional connectivity gradients in acute ischemic stroke

    Article • April 2024, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  14. Using machine learning to study brain tumor effects on brain structure and function changes

    Article • Communications Biology, April 2024, Springer Science + Business Media

    Dr. Alessandro Crimi

  15. Deep Learning Glioma Grading with the Tumor Microenvironment Analysis Protocol for Comprehensive Learning, Discovering, and Quantifying Microenvironmental Features

    Article • Journal of Imaging Informatics in Medicine, February 2024, Springer Science + Business Media

    Dr. Alessandro Crimi

  16. Investigation of Energy-Efficient AI Model Architectures and Compression Techniques for “Green” Fetal Brain Segmentation

    Article • January 2024, Springer Science + Business Media

    Dr. Alessandro Crimi

  17. Predicting Misfolded Protein Spread in Alzheimer’s Disease with Machine Learning and Spread Models

    Article • Cerebral Cortex, October 2023, Oxford University Press (OUP)

    Dr. Alessandro Crimi

  18. Deep Learning Glioma Grading with the Tumor Microenvironment Analysis Protocol for A Comprehensive Learning, Discovering, and Quantifying Microenvironmental Features

    Article • June 2023, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  19. Directed networks and resting-state effective brain connectivity with state-space reconstruction using reservoir computing causality

    Article • June 2023, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  20. An intact oculomotor neural circuit in congenital blindness

    Article • March 2023, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi, Prof. Emiliano Ricciardi

  21. 3D Reconstructions of Brain from MRI Scans Using Neural Radiance Fields

    Article • January 2023, Springer Science + Business Media

    Dr. Alessandro Crimi

  22. Impact of the Pre-processing and Balancing of EEG Data on the Performance of Graph Neural Network for Epileptic Seizure Classification

    Article • January 2023, Springer Science + Business Media

    Dr. Alessandro Crimi

  23. Community Detection in Brain Connectome using Quantum Annealer Devices

    Article • December 2022, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  24. Structural Reorganization Following a Brain Tumor: A Machine Learning Study Considering Desynchronized Functional Oscillations

    Article • November 2022, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  25. "ML and simulations predict future misfolded protein depositions linked to Alzheimer's."

    Article • October 2022, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  26. Bayesian Filtered Generation of Post-surgical Brain Connectomes on Tumor Patients

    Article • January 2022, Springer Science + Business Media

    Dr. Alessandro Crimi

  27. Structurally constrained effective brain connectivity

    Article • December 2021, Center for Open Science

    Dr. Alessandro Crimi

  28. We are connecting changes in the brain to genes.

    Article • Frontiers in Human Neuroscience, December 2021, Frontiers

    Alessandro Crimi, Dr. Alessandro Crimi

  29. An integrated genomic approach to dissect the genetic landscape regulating the cell-to-cell transfer of α-synuclein

    Article • Cell Reports, June 2021, Elsevier

    Alessandro Crimi, Dr. Alessandro Crimi

  30. Structurally Constrained Effective Brain Connectivity

    Article • NeuroImage, June 2021, Elsevier

    Alessandro Crimi, Dr. Alessandro Crimi

  31. Classification and Generation of Microscopy Images With Plasmodium Falciparum Via Artificial Neural Networks

    Article • July 2020, Research Square

    Dr. Alessandro Crimi

  32. Classification and Generation of Microscopy Images with Plasmodium Falciparum via Artificial Neural Networks

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  33. BiGen: Integrative Clinical and Brain-Imaging Genetics Analysis Using Structural Equation Model

    Article • February 2020, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  34. An integrated genomic approach to dissect the genetic landscape regulating the cell-to-cell transfer of a-synuclein

    Article • December 2019, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  35. Boosting diabetes and pre-diabetes detection in rural Ghana

    Article • F1000Research, August 2019, Faculty of 1000, Ltd.

    Dr. Alessandro Crimi

  36. Spreading Model for Patients with Parkinson’s Disease Based on Connectivity Differences

    Article • April 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  37. .

    Article • F1000Research, March 2019, Faculty of 1000, Ltd.

    Rosemary Serwah Amoah, Bernard Effah Nyarko, Dr. Alessandro Crimi

  38. Overlaps in brain dynamic functional connectivity between schizophrenia and autism spectrum disorder

    Article • Scientific African, March 2019, Elsevier

    Dr. Alessandro Crimi

  39. A method to find difference in brain connections between different groups or populations

    Article • Scientific Reports, January 2019, Springer Science + Business Media

    Alessandro Crimi, Dr. Alessandro Crimi

  40. Multi-stage Association Analysis of Glioblastoma Gene Expressions with Texture and Spatial Patterns

    Article • January 2019, Springer Science + Business Media

    Samar Salah Mohamedahmed Elsheikh, Dr. Alessandro Crimi, Dr Spyridon Bakas

  41. Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer’s Disease

    Article • June 2018, Cold Spring Harbor Laboratory Press

    Samar Salah Mohamedahmed Elsheikh, Dr. Alessandro Crimi

  42. Structurally Constrained Effective Brain Connectivity

    Article • April 2018, Cold Spring Harbor Laboratory Press

    Dr. Alessandro Crimi

  43. Alzheimer's gene expressions association with the brain's connectomics global features.

    Article • April 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Samar Salah Mohamedahmed Elsheikh, Dr. Alessandro Crimi

  44. Case-control discrimination through effective brain connectivity

    Article • April 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  45. Connectome of Autistic Brains, Global Versus Local Characterization

    Article • January 2017, Springer Science + Business Media

    Dr. Alessandro Crimi

  46. A system with mobile phones and portable ultrasound machines to improve prenatal care in rural areas

    Article • BMC Pregnancy and Childbirth, June 2016, Springer Science + Business Media

    Alessandro Crimi, Dr. Alessandro Crimi

  47. Automatic Measurement of Venous Pressure Using B-Mode Ultrasound

    Article • IEEE Transactions on Biomedical Engineering, February 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  48. A novel method for merging structural and functional brain connectivity

    Article • January 2016, Springer Science + Business Media

    Alessandro Crimi, Dr. Alessandro Crimi

  49. Brain Lesions, Introduction

    Article • January 2016, Springer Science + Business Media

    Dr. Alessandro Crimi, Dr Spyridon Bakas

  50. Topological Measures of Connectomics for Low Grades Glioma

    Article • January 2016, Springer Science + Business Media

    Dr. Alessandro Crimi

  51. Automatic fetal measurements for low-cost settings by using Local Phase Bone detection

    Article • August 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  52. Segmentation of ultrasound images of fetal anatomic structures using random forest for low-cost settings

    Article • August 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  53. Prediction of clinical outcomes for MS patients from images

    Article • PLOS One, April 2014, PLOS

    Alessandro Crimi, Dr. Alessandro Crimi

  54. Semi-automatic classification of lesion patterns in patients with clinically isolated syndrome

    Article • April 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  55. Multiple sclerosis lesions evolution in patients with clinically isolated syndrome

    Article • March 2013, SPIE

    Dr. Alessandro Crimi

  56. Shape-based Assessment of Vertebral Fracture Risk in Postmenopausal Women Using Discriminative Shape Alignment

    Article • Academic Radiology, April 2012, Elsevier

    Dr. Alessandro Crimi

  57. A Bayesian Framework for Automated Cardiovascular Risk Scoring on Standard Lumbar Radiographs

    Article • IEEE Transactions on Medical Imaging, March 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  58. Maximum a Posteriori Estimation of Linear Shape Variation With Application to Vertebra and Cartilage Modeling

    Article • IEEE Transactions on Medical Imaging, August 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Alessandro Crimi

  59. Unsupervised shape clustering of vertebra shapes using simulated annealing and nonlinear dimensionality reduction

    Article • January 2010, ACM (Association for Computing Machinery)

    Dr. Alessandro Crimi

  60. Bayes estimation of shape model with application to vertebrae boundaries

    Article • February 2009, SPIE

    Dr. Alessandro Crimi