All Stories

  1. Semantic Reasoning Using Standard Attention-Based Models: An Application to Chronic Disease Literature

    Article • Big Data and Cognitive Computing, June 2025, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  2. Administration of Tamoxifen Can Regulate Changes in Gene Expression during the Acute Phase of Traumatic Spinal Cord Injury

    Article • Current Issues in Molecular Biology, September 2023, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  3. CD4+ T Cell Regulatory Network Underlies the Decrease in Th1 and the Increase in Anergic and Th17 Subsets in Severe COVID-19

    Article • Pathogens, December 2022, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  4. Effect of Hypoxia in the Transcriptomic Profile of Lung Fibroblasts from Idiopathic Pulmonary Fibrosis

    Article • Cells, September 2022, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  5. Functional Repercussions of Hypoxia-Inducible Factor-2α in Idiopathic Pulmonary Fibrosis

    Article • Cells, September 2022, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  6. Lack of ZNF365 Drives Senescence and Exacerbates Experimental Lung Fibrosis

    Article • Cells, September 2022, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  7. An Epistatic Network Describes oppA and glgB as Relevant Genes for Mycobacterium tuberculosis

    Article • Frontiers in Molecular Biosciences, May 2022, Frontiers

    Dr. Yalbi I Balderas-Martínez

  8. Cyclic Attractors Are Critical for Macrophage Differentiation, Heterogeneity, and Plasticity

    Article • Frontiers in Molecular Biosciences, April 2022, Frontiers

    Dr. Yalbi I Balderas-Martínez

  9. Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways

    Article • Aging, May 2021, Impact Journals, LLC

    Dr. Yalbi I Balderas-Martínez

  10. Clinical and Immunological Factors That Distinguish COVID-19 From Pandemic Influenza A(H1N1)

    Article • Frontiers in Immunology, April 2021, Frontiers

    Dr. Yalbi I Balderas-Martínez

  11. Circulating microRNA Signature Associated to Interstitial Lung Abnormalities in Respiratory Asymptomatic Subjects

    Article • Cells, June 2020, MDPI AG

    Dr. Yalbi I Balderas-Martínez

  12. PulmonDB: a curated lung disease gene expression database

    Article • Scientific Reports, January 2020, Springer Science + Business Media

    Dr. Yalbi I Balderas-Martínez

  13. Transforming growth factor beta 1 induces methylation changes in lung fibroblasts

    Article • PLOS One, October 2019, PLOS

    Dr. Yalbi I Balderas-Martínez, Annie Pardo

  14. PulmonDB: a curated lung disease gene expression database

    Article • August 2019, Cold Spring Harbor Laboratory Press

    Dr. Yalbi I Balderas-Martínez

  15. Accelerated aging induced by deficiency of Zmpste24 protects old mice to develop bleomycin-induced pulmonary fibrosis

    Article • Aging, December 2018, Impact Journals, LLC

    Dr. Yalbi I Balderas-Martínez

  16. Inflammatory pathways are upregulated in the nasal epithelium in patients with idiopathic pulmonary fibrosis

    Article • November 2018, Springer Science + Business Media

    Dr. Yalbi I Balderas-Martínez

  17. R-Spondin-2 Is Upregulated in Idiopathic Pulmonary Fibrosis and Affects Fibroblast Behavior

    Article • American Journal of Respiratory Cell and Molecular Biology, July 2018, American Thoracic Society

    Dr. Yalbi I Balderas-Martínez, Moises Selman

  18. Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis

    Article • Database, January 2017, Oxford University Press (OUP)

    Dr Mishael Sánchez-Pérez, Dr. Yalbi I Balderas-Martínez

  19. Overview of the interactive task in BioCreative V

    Article • Database, January 2016, Oxford University Press (OUP)

    Dr. Yalbi I Balderas-Martínez

  20. The functional landscape bound to the transcription factors of Escherichia coli K-12

    Article • Computational Biology and Chemistry, October 2015, Elsevier

    Dr. Yalbi I Balderas-Martínez

  21. Mathematical modeling of the apo and holo transcriptional regulation in Escherichia coli

    Article • Molecular BioSystems, January 2015, Royal Society of Chemistry

    Dr. Yalbi I Balderas-Martínez

  22. Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12

    Article • Database, June 2014, Oxford University Press (OUP)

    Dr. Yalbi I Balderas-Martínez

  23. Correction: Transcription Factors in Escherichia coli Prefer the Holo Conformation

    Article • PLOS One, August 2013, PLOS

    Dr. Yalbi I Balderas-Martínez

  24. Transcription Factors in Escherichia coli Prefer the Holo Conformation

    Article • PLOS One, June 2013, PLOS

    Dr. Yalbi I Balderas-Martínez

  25. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

    Article • Nucleic Acids Research, November 2012, Oxford University Press (OUP)

    Dr. Yalbi I Balderas-Martínez, Ing. Victor Chávez Del Moral

  26. Regulation by transcription factors in bacteria: beyond description

    Article • FEMS Microbiology Reviews, January 2009, Oxford University Press (OUP)

    Dr Agustino Martínez-Antonio, Dr. Yalbi I Balderas-Martínez