All Stories

  1. quercusTOA: integrating functional annotations and comparative genomics across oak lineages

    Article • Frontiers in Bioinformatics, June 2026, Frontiers

    Unai López de Heredia

  2. Impact of simulated microgravity in short-term evolution of an RNA bacteriophage

    Article • Frontiers in Microbiology, December 2025, Frontiers

    Unai López de Heredia

  3. Physiological and molecular response to drought in somatic plants from Pinus radiata embryonal masses induced at high temperatures

    Article • Plant Physiology and Biochemistry, July 2025, Elsevier

    Unai López de Heredia

  4. gymnotoa-db: a database and application to optimize functional annotation in gymnosperms

    Article • Database, January 2025, Oxford University Press (OUP)

    Unai López de Heredia

  5. S im H yb 2: a software tool to explore and illustrate evolutionary forces in population genetics teaching and research. Application to Conservation G...

    Article • Journal of Biological Education, October 2024, Taylor & Francis

    Unai López de Heredia

  6. Missing genotype imputation in non‐model species using self‐organizing maps

    Article • Molecular Ecology Resources, July 2024, Wiley

    Unai López de Heredia

  7. Rhytidome- and cork-type barks of holm oak, cork oak and their hybrids highlight processes leading to cork formation

    Article • BMC Plant Biology, June 2024, Springer Science + Business Media

    Unai López de Heredia

  8. SIMHYB 2: a software tool to explore and illustrate evolutionary forces in Population Genetics teaching and research. Application to Conservation Genetics

    Article • February 2024, openRxiv

    Unai López de Heredia

  9. ModelBark: a toy model to study bark formation in woody species

    Article • in silico Plants, January 2024, Oxford University Press (OUP)

    Unai López de Heredia

  10. Physiological and Molecular Response to Drought in Somatic Plants from Pinus Radiata Embryonal Masses Induced at High Temperatures

    Article • January 2024, Elsevier

    Unai López de Heredia

  11. Phenotypic plasticity in Pinus canariensis seedlings growing at chilling and freezing temperatures

    Article • Frontiers in Forests and Global Change, October 2023, Frontiers

    Unai López de Heredia

  12. Highly informative SNP markers for routine individual identification and certification of forest reproductive material in Quercus ilex and Q. suber and their hybrids

    Article • Forest Ecology and Management, September 2023, Elsevier

    Unai López de Heredia

  13. Missing genotype imputation in non-model species using Self-Organizing Maps

    Article • June 2023, Wiley

    Unai López de Heredia

  14. DEGoldS: A Workflow to Assess Differential Expression Pipelines through Gold-standard Construction

    Article • Current Bioinformatics, May 2023, Bentham Science Publishers

    Unai López de Heredia, Mikel Hurtado

  15. Rhytidome- and cork-type barks of holm oak, cork oak and their hybrids highlight processes leading to cork formation

    Article • March 2023, openRxiv

    Unai López de Heredia

  16. Qualitative and Quantitative Anatomical Analysis of the Constitutive Bark of Q. ilex x Q. suber Hybrids

    Article • Plants, September 2022, MDPI AG

    Unai López de Heredia

  17. DEGoldS: a workflow to assess the accuracy of differential expression analysis pipelines through gold-standard construction

    Article • September 2022, openRxiv

    Unai López de Heredia

  18. Qualitative and quantitative analysis of the constitutive bark of Q. ilex x Q. suber hybrids

    Article • July 2022, openRxiv

    Unai López de Heredia

  19. NGScloud2: optimized bioinformatic analysis using Amazon Web Services

    Article • December 2020, openRxiv

    Unai López de Heredia

  20. TOA: A software package for automated functional annotation in non‐model plant species

    Article • Molecular Ecology Resources, November 2020, Wiley

    Unai López de Heredia

  21. ddRAD Sequencing-Based Identification of Genomic Boundaries and Permeability in Quercus ilex and Q. suber Hybrids

    Article • Frontiers in Plant Science, September 2020, Frontiers

    Unai López de Heredia

  22. TOA: a software package for automated functional annotation in non-model plant species

    Article • July 2020, Wiley

    Unai López de Heredia

  23. Hardware performance evaluation of de novo transcriptome assembly software in Amazon Elastic Compute Cloud

    Article • Current Bioinformatics, December 2019, Bentham Science Publishers

    Carmen Collada, Jose Luis Vazquez-Poletti, Unai López de Heredia, Victor Chano

  24. A topoclimate model for Quaternary insular speciation

    Article • Journal of Biogeography, October 2019, Wiley

    Victor Garcia Olivares, Unai López de Heredia

  25. RADdesigner: a workflow to select the optimal sequencing methodology in genotyping experiments on woody plant species

    Article • Tree Genetics & Genomes, July 2019, Springer Science + Business Media

    Unai López de Heredia

  26. NGScloud: RNA-seq analysis of non-model species using cloud computing

    Article • Bioinformatics, May 2018, Oxford University Press (OUP)

    Unai López de Heredia

  27. Molecular evidence of bidirectional introgression between Quercus suber and Quercus ilex

    Article • iForest - Biogeosciences and Forestry, April 2018, Italian Society of Sivilculture and Forest Ecology (SISEF)

    Unai López de Heredia

  28. Leaf morphology of progenies in Q. suber, Q. ilex, and their hybrids using multivariate and geometric morphometric analysis

    Article • iForest - Biogeosciences and Forestry, February 2018, Italian Society of Sivilculture and Forest Ecology (SISEF)

    Unai López de Heredia

  29. SimHyb: a simulation software for the study of the evolution of hybridizing populations. Application to Quercus ilex and Q. suber suggests hybridization could be underestimated

    Article • iForest - Biogeosciences and Forestry, February 2018, Italian Society of Sivilculture and Forest Ecology (SISEF)

    Unai López de Heredia

  30. Transcriptomic analysis of juvenile wood formation during the growing season in Pinus canariensis

    Article • Holzforschung, January 2017, De Gruyter

    Unai López de Heredia

  31. The Role of Hybridization on the Adaptive Potential of Mediterranean Sclerophyllous Oaks: The Case of the Quercus ilex x Q. suber Complex

    Article • January 2017, Springer Science + Business Media

    Unai López de Heredia

  32. ddradseqtools: a software package for in silico simulation and testing of double‐digest RADseq experiments

    Article • Molecular Ecology Resources, July 2016, Wiley

    Unai López de Heredia

  33. RNA-seq analysis in forest tree species: bioinformatic problems and solutions

    Article • Tree Genetics & Genomes, March 2016, Springer Science + Business Media

    Unai López de Heredia

  34. High seed dispersal ability of Pinus canariensis in stands of contrasting density inferred from genotypic data

    Article • Forest Systems, June 2015, Departmento de Publicaciones del CSIC

    Unai López de Heredia

  35. Signatures of volcanism and aridity in the evolution of an insular pine (Pinus canariensis Chr. Sm. Ex DC in Buch)

    Article • Heredity, March 2014, Nature

    Carmen Collada, Unai López de Heredia

  36. Vulnerability to cavitation, hydraulic efficiency, growth and survival in an insular pine (Pinus canariensis)

    Article • Annals of Botany, May 2013, Oxford University Press (OUP)

    Dr Francisco Javier Cano, Carmen Collada, Unai López de Heredia

  37. Assessment of spatial discordance of primary and effective seed dispersal of European beech (Fagus sylvatica L.) by ecological and genetic methods

    Article • Molecular Ecology, February 2013, Wiley

    Unai López de Heredia

  38. Effect of canopy closure on pollen dispersal in a wind-pollinated species (Fagus sylvatica L.)

    Article • Plant Ecology, September 2012, Springer Science + Business Media

    Unai López de Heredia

  39. The Atlantic–Mediterranean watershed, river basins and glacial history shape the genetic structure of Iberian poplars

    Article • Molecular Ecology, May 2012, Wiley

    Unai López de Heredia

  40. Small-scale variation of vegetation in a mixed forest understorey is partly controlled by the effect of overstory composition on litter accumulation

    Article • Journal of Forest Research, December 2011, Taylor & Francis

    Unai López de Heredia

  41. High biogeographical and evolutionary value of Canary Island pine populations out of the elevational pine belt: the case of a relict coastal population

    Article • Journal of Biogeography, November 2010, Wiley

    Unai López de Heredia

  42. Spatiotemporal variation of a Pinus seed rain available for an endemic finch in an insular environment

    Article • European Journal of Wildlife Research, October 2010, Springer Science + Business Media

    Unai López de Heredia

  43. Historical and recent changes in the Spanish forests: A socio-economic process

    Article • Review of Palaeobotany and Palynology, October 2010, Elsevier

    Unai López de Heredia

  44. Relevance of genetics for conservation policies: the case of Minorcan cork oaks

    Article • Annals of Botany, August 2009, Oxford University Press (OUP)

    Unai López de Heredia

  45. Variation components in leaf morphology of recruits of two hybridising oaks [Q. petraea (Matt.) Liebl. and Q. pyrenaica Willd.] at small spatial scale

    Article • European Journal of Forest Research, July 2009, Springer Science + Business Media

    Unai López de Heredia

  46. Habitat characteristics and seed crops used by Blue ChaffinchesFringilla teydeain winter: implications for conservation management

    Article • Bird Study, May 2009, Taylor & Francis

    Unai López de Heredia

  47. Multi‐marker phylogeny of three evergreen oaks reveals vicariant patterns in the Western Mediterranean

    Article • Taxon, November 2007, Wiley

    Unai López de Heredia

  48. Molecular and palaeoecological evidence for multiple glacial refugia for evergreen oaks on the Iberian Peninsula

    Article • Journal of Biogeography, September 2007, Wiley

    Carmen Collada, Unai López de Heredia

  49. The Balearic Islands: a reservoir of cpDNA genetic variation for evergreen oaks

    Article • Journal of Biogeography, May 2005, Wiley

    Unai López de Heredia

  50. High variability of chloroplast DNA in three Mediterranean evergreen oaks indicates complex evolutionary history

    Article • Heredity, August 2004, Nature

    Carmen Collada, Unai López de Heredia