All Stories

  1. Monitoring the stability of aerobic granular sludge under increasing fractions of slowly biodegradable substrate using quantitative image analysis

    Article • Chemosphere, April 2025, Elsevier

    Professor Eugénio Campos Ferreira

  2. 2030 Sustainable Development Goals - UMinho Research & Innovation Open Days

    Article • January 2025, University of Minho

    Professor Eugénio Campos Ferreira

  3. Research and Innovation 2020.2021.2022

    Article • January 2025, University of Minho

    Professor Eugénio Campos Ferreira

  4. Quantitative image analysis for assessing extracellular polymeric substances in activated sludge under atrazine exposure

    Article • Separation and Purification Technology, December 2024, Elsevier

    Professor Eugénio Campos Ferreira

  5. BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, March 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Eugénio Campos Ferreira

  6. Cookie composition analysis by Fourier transform near infrared spectroscopy coupled to chemometric analysis

    Article • Food Chemistry, March 2024, Elsevier

    Professor Eugénio Campos Ferreira

  7. Unravelling microbiome changes in aerobic granular sludge saline wastewater treatment using a slow stepwise salt increase strategy

    Article • Environmental Science Advances, January 2024, Royal Society of Chemistry

    Professor Eugénio Campos Ferreira

  8. A Review of Computational Modeling in Wastewater Treatment Processes

    Article • ACS ES&T Water, August 2023, American Chemical Society (ACS)

    Professor Eugénio Campos Ferreira

  9. Publicação Científica, Ciência Aberta e Avaliação de Investigação — Breve Análise Crítica

    Article • June 2023, University of Minho

    Professor Eugénio Campos Ferreira

  10. Monitoring biotechnological processes through quantitative image analysis: Application to 2-phenylethanol production by Yarrowia lipolytica

    Article • Process Biochemistry, June 2023, Elsevier

    Professor Eugénio Campos Ferreira

  11. Quantitative Image Analysis as a Valuable Tool to Assess Aerobic Wastewater Treatment Systems

    Article • January 2023, Taylor & Francis

    Professor Eugénio Campos Ferreira

  12. Fate and occurrence of microplastics in wastewater treatment plants

    Article • Environmental Science Advances, January 2023, Royal Society of Chemistry

    Professor Eugénio Campos Ferreira

  13. Effects of desloratadine on activated sludge: Behaviour of EPS and sludge properties

    Article • Journal of Environmental Chemical Engineering, October 2022, Elsevier

    Professor Eugénio Campos Ferreira

  14. merlin , an improved framework for the reconstruction of high-quality genome-scale metabolic models

    Article • Nucleic Acids Research, June 2022, Oxford University Press (OUP)

    Professor Eugénio Campos Ferreira

  15. The Role of Extracellular Polymeric Substances in Micropollutant Removal

    Article • Frontiers in Chemical Engineering, May 2022, Frontiers

    Professor Eugénio Campos Ferreira

  16. Prediction of sludge settleability, density and suspended solids of aerobic granular sludge in the presence of pharmaceutically active compounds by quantitative image analysis and chemometric tools

    Article • Journal of Environmental Chemical Engineering, April 2022, Elsevier

    Professor Eugénio Campos Ferreira

  17. Treatment of saline wastewater amended with endocrine disruptors by aerobic granular sludge: Assessing performance and microbial community dynamics

    Article • Journal of Environmental Chemical Engineering, April 2022, Elsevier

    Professor Eugénio Campos Ferreira

  18. Quantitative image analysis as a robust tool to assess effluent quality from an aerobic granular sludge system treating industrial wastewater

    Article • Chemosphere, March 2022, Elsevier

    Professor Eugénio Campos Ferreira

  19. FT-NIR spectroscopy analysis for monitoring the microbial production of 2-phenylethanol using crude glycerol as carbon source

    Article • LWT, February 2022, Elsevier

    Professor Eugénio Campos Ferreira

  20. Monitoring morphological changes from activated sludge to aerobic granular sludge under distinct organic loading rates and increasing minimal imposed sludge settling velocities through quantitative image analysis

    Article • Chemosphere, January 2022, Elsevier

    Professor Eugénio Campos Ferreira

  21. Impact of Industrial Wastewater Discharge on the Environment and Human Health

    Article • December 2021, Royal Society of Chemistry

    Professor Eugénio Campos Ferreira

  22. High Carbon Load in Food Processing Industrial Wastewater is a Driver for Metabolic Competition in Aerobic Granular Sludge

    Article • Frontiers in Environmental Science, September 2021, Frontiers

    Professor Eugénio Campos Ferreira

  23. Effect of ibuprofen on extracellular polymeric substances (EPS) production and composition, and assessment of microbial structure by quantitative image analysis

    Article • Journal of Environmental Management, September 2021, Elsevier

    Professor Eugénio Campos Ferreira

  24. Validation of a quantitative image analysis methodology for the assessment of the morphology and structure of aerobic granular sludge in the presence of pharmaceutically active compounds

    Article • Environmental Technology & Innovation, August 2021, Elsevier

    Professor Eugénio Campos Ferreira

  25. Life cycle assessment of bacterial cellulose production

    Article • The International Journal of Life Cycle Assessment, April 2021, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  26. Increased extracellular polymeric substances production contributes for the robustness of aerobic granular sludge during long-term intermittent exposure to 2-fluorophenol in saline wastewater

    Article • Journal of Water Process Engineering, April 2021, Elsevier

    Professor Eugénio Campos Ferreira

  27. COVID-19, Chikungunya, Dengue and Zika Diseases: An Analytical Platform Based on MALDI-TOF MS, IR Spectroscopy and RT-qPCR for Accurate Diagnosis and Accelerate Epidemics Control

    Article • Microorganisms, March 2021, MDPI AG

    Professor Eugénio Campos Ferreira

  28. A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli

    Article • PLoS Computational Biology, March 2021, PLOS

    Professor Eugénio Campos Ferreira

  29. BioISO: an objective-oriented application for assisting the curation of genome-scale metabolic models

    Article • March 2021, Cold Spring Harbor Laboratory Press

    Professor Eugénio Campos Ferreira

  30. Long-term stability of a non-adapted aerobic granular sludge process treating fish canning wastewater associated to EPS producers in the core microbiome

    Article • The Science of The Total Environment, February 2021, Elsevier

    Professor Eugénio Campos Ferreira

  31. Environmentally-friendly technology for rapid identification and quantification of emerging pollutants from wastewater using infrared spectroscopy

    Article • Environmental Toxicology and Pharmacology, November 2020, Elsevier

    Professor Eugénio Campos Ferreira

  32. Variability in the composition of extracellular polymeric substances from a full-scale aerobic granular sludge reactor treating urban wastewater

    Article • Journal of Environmental Chemical Engineering, October 2020, Elsevier

    Professor Eugénio Campos Ferreira

  33. Bio-Based Nanoparticles as a Carrier of β-Carotene: Production, Characterisation and In Vitro Gastrointestinal Digestion

    Article • Molecules, September 2020, MDPI AG

    Professor Eugénio Campos Ferreira

  34. A kinetic model of the central carbon metabolism for acrylic acid production inEscherichia coli

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Professor Eugénio Campos Ferreira

  35. Sludge volume index and suspended solids estimation of mature aerobic granular sludge by quantitative image analysis and chemometric tools

    Article • Separation and Purification Technology, March 2020, Elsevier

    Dr Angeles Val del Rio, Professor Eugénio Campos Ferreira

  36. Degradation of widespread pharmaceuticals by activated sludge: Kinetic study, toxicity assessment, and comparison with adsorption processes

    Article • Journal of Water Process Engineering, February 2020, Elsevier

    Professor Eugénio Campos Ferreira

  37. Optimization of bacterial nanocellulose fermentation using recycled paper sludge and development of novel composites

    Article • Applied Microbiology and Biotechnology, October 2019, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  38. SamPler – a novel method for selecting parameters for gene functional annotation routines

    Article • BMC Bioinformatics, September 2019, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  39. Environmental impact and biological removal processes of pharmaceutically active compounds: The particular case of sulfonamides, anticonvulsants and steroid estrogens

    Article • Critical Reviews in Environmental Science and Technology, July 2019, Taylor & Francis

    Professor Eugénio Campos Ferreira

  40. Discrimination of Camellia japonica cultivars and chemometric models: An interlaboratory study

    Article • Computers and Electronics in Agriculture, April 2019, Elsevier

    Professor Eugénio Campos Ferreira

  41. Mapping Salmonella typhimurium pathways using 13C metabolic flux analysis

    Article • Metabolic Engineering, March 2019, Elsevier

    Professor Eugénio Campos Ferreira

  42. Quantification of pharmaceutical compounds in wastewater samples by near infrared spectroscopy (NIR)

    Article • Talanta, March 2019, Elsevier

    Professor Eugénio Campos Ferreira

  43. NIR spectroscopy applied to the determination of 2‐phenylethanol and l‐phenylalanine concentrations in culture medium of Yarrowia lipolytica

    Article • Journal of Chemical Technology & Biotechnology, November 2018, Wiley

    Professor Eugénio Campos Ferreira

  44. New PLS analysis approach to wine volatile compounds characterization by near infrared spectroscopy (NIR)

    Article • Food Chemistry, April 2018, Elsevier

    Professor Eugénio Campos Ferreira

  45. Reconstructing High-Quality Large-Scale Metabolic Models with merlin

    Article • December 2017, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  46. An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing

    Article • Biotechnology Journal, November 2017, Wiley

    Professor Eugénio Campos Ferreira

  47. Erratum to: Quantitative physiology and elemental composition of Kluyveromyces lactis CBS 2359 during growth on glucose at different specific growth rates

    Article • Antonie van Leeuwenhoek, October 2017, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  48. Quantitative physiology and elemental composition of Kluyveromyces lactis CBS 2359 during growth on glucose at different specific growth rates

    Article • Antonie van Leeuwenhoek, September 2017, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  49. Monitoring biological wastewater treatment processes: recent advances in spectroscopy applications

    Article • Reviews in Environmental Science and Bio/Technology, August 2017, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  50. Simultaneous partial nitrification and 2-fluorophenol biodegradation with aerobic granular biomass: Reactor performance and microbial communities

    Article • Bioresource Technology, August 2017, Elsevier

    Professor Eugénio Campos Ferreira

  51. BOOK OF ABSTRACTS OF CEB ANNUAL MEETING 2017

    Article • July 2017, University of Minho

    Professor Eugénio Campos Ferreira

  52. Quantitative image analysis of polyhydroxyalkanoates inclusions from microbial mixed cultures under different SBR operation strategies

    Article • Environmental Science and Pollution Research, May 2017, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  53. Genome-Wide Semi-Automated Annotation of Transporter Systems

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, March 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Eugénio Campos Ferreira

  54. Exploiting intrinsic fluorescence spectroscopy to discriminate between Acinetobacter calcoaceticus–Acinetobacter baumannii complex species

    Article • RSC Advances, January 2017, Royal Society of Chemistry

    Professor Eugénio Campos Ferreira

  55. Online Analysis for Industrial Bioprocesses

    Article • January 2017, Elsevier

    Professor Eugénio Campos Ferreira

  56. A Comparative Proteome Analysis of Escherichia coli ΔrelA Mutant Cells

    Article • Frontiers in Bioengineering and Biotechnology, October 2016, Frontiers

    Professor Eugénio Campos Ferreira

  57. Estimation of effluent quality parameters from an activated sludge system using quantitative image analysis

    Article • Chemical Engineering Journal, February 2016, Elsevier

    Professor Eugénio Campos Ferreira

  58. Discrimination of clinically relevant Candida species by Fourier-transform infrared spectroscopy with attenuated total reflectance (FTIR-ATR)

    Article • RSC Advances, January 2016, Royal Society of Chemistry

    Professor Eugénio Campos Ferreira

  59. Quantitative image analysis as a tool for Yarrowia lipolytica dimorphic growth evaluation in different culture media

    Article • Journal of Biotechnology, January 2016, Elsevier

    Professor Eugénio Campos Ferreira

  60. Economic analysis and environmental impact assessment of three different fermentation processes for fructooligosaccharides production

    Article • Bioresource Technology, December 2015, Elsevier

    Professor Eugénio Campos Ferreira

  61. Correction: Population Dynamics of a Salmonella Lytic Phage and Its Host: Implications of the Host Bacterial Growth Rate in Modelling

    Article • PLOS One, August 2015, PLOS

    Professor Eugénio Campos Ferreira

  62. Near-infrared spectroscopy for the detection and quantification of bacterial contaminations in pharmaceutical products

    Article • International Journal of Pharmaceutics, August 2015, Elsevier

    Professor Eugénio Campos Ferreira

  63. Salmonella typhimuriumandEscherichia colidissimilarity: Closely related bacteria with distinct metabolic profiles

    Article • Biotechnology Progress, July 2015, Wiley

    Professor Eugénio Campos Ferreira

  64. Reconstructing genome-scale metabolic models with merlin

    Article • Nucleic Acids Research, April 2015, Oxford University Press (OUP)

    Professor Eugénio Campos Ferreira

  65. Polyhydroxyalkanoate granules quantification in mixed microbial cultures using image analysis: Sudan Black B versus Nile Blue A staining

    Article • Analytica Chimica Acta, March 2015, Elsevier

    Professor Eugénio Campos Ferreira

  66. Aroma production by Yarrowia lipolytica in airlift and stirred tank bioreactors: Differences in yeast metabolism and morphology

    Article • Biochemical Engineering Journal, January 2015, Elsevier

    Professor Eugénio Campos Ferreira

  67. Population Dynamics of a Salmonella Lytic Phage and Its Host: Implications of the Host Bacterial Growth Rate in Modelling

    Article • PLOS One, July 2014, PLOS

    Professor Eugénio Campos Ferreira

  68. What is the relationship between intracellular and extracellular metabolites? The theory of “metabolic overflow” put into test

    Article • New Biotechnology, July 2014, Elsevier

    Professor Eugénio Campos Ferreira

  69. iOD907, the first genome-scale metabolic model for the milk yeastKluyveromyces lactis

    Article • Biotechnology Journal, May 2014, Wiley

    Professor Eugénio Campos Ferreira

  70. Optimization of fed-batch fermentation processes with bio-inspired algorithms

    Article • Expert Systems with Applications, April 2014, Elsevier

    Professor Eugénio Campos Ferreira

  71. Monitoring intracellular polyphosphate accumulation in enhanced biological phosphorus removal systems by quantitative image analysis

    Article • Water Science & Technology Water Supply, March 2014, IWA Publishing

    Professor Eugénio Campos Ferreira

  72. Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  73. Image Analysis Technique as a Tool to Identify Morphological Changes in Trametes versicolor Pellets According to Exopolysaccharide or Laccase Production

    Article • Applied Biochemistry and Biotechnology, December 2013, Springer Science + Business Media

    Professor Eugénio Campos Ferreira, Dr Ana Paula M Tavares, Prof Ana M R B Xavier

  74. Activated sludge characterization through microscopy: A review on quantitative image analysis and chemometric techniques

    Article • Analytica Chimica Acta, November 2013, Elsevier

    Professor Eugénio Campos Ferreira

  75. Quantitative image analysis for the characterization of microbial aggregates in biological wastewater treatment: a review

    Article • Environmental Science and Pollution Research, May 2013, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  76. Identification of Metabolic Engineering Targets through Analysis of Optimal and Sub-Optimal Routes

    Article • PLOS One, April 2013, PLOS

    Professor Eugénio Campos Ferreira

  77. Metabolic responses to recombinant bioprocesses in Escherichia coli

    Article • Journal of Biotechnology, April 2013, Elsevier

    Professor Eugénio Campos Ferreira

  78. Automatic identification of activated sludge disturbances and assessment of operational parameters

    Article • Chemosphere, April 2013, Elsevier

    Professor Eugénio Campos Ferreira

  79. Prediction of intracellular storage polymers using quantitative image analysis in enhanced biological phosphorus removal systems

    Article • Analytica Chimica Acta, April 2013, Elsevier

    Professor Eugénio Campos Ferreira

  80. Molecular Aspects and Comparative Genomics of Bacteriophage Endolysins

    Article • Journal of Virology, February 2013, ASM Journals

    Professor Eugénio Campos Ferreira, Franklin L. Nobrega

  81. Image Analysis for Automatic Characterization of Polyhydroxyalcanoates Granules

    Article • January 2013, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  82. Genome scale metabolic network reconstruction of the pathogen Enterococcus faecalis

    Article • January 2013, Elsevier

    Professor Eugénio Campos Ferreira

  83. Energy recovery and impact on land use of Maltese municipal solid waste incineration

    Article • Energy, January 2013, Elsevier

    Professor Eugénio Campos Ferreira

  84. Metabolic Engineering VII Conference

    Article • December 2012, Office of Scientific and Technical Information (OSTI)

    Professor Eugénio Campos Ferreira

  85. Influence of the RelA Activity on E. coli Metabolism by Metabolite Profiling of Glucose-Limited Chemostat Cultures

    Article • Metabolites, October 2012, MDPI AG

    Professor Eugénio Campos Ferreira

  86. Random sampling of elementary flux modes in large-scale metabolic networks

    Article • Bioinformatics, September 2012, Oxford University Press (OUP)

    Professor Eugénio Campos Ferreira

  87. Phages as Therapeutic Tools to Control Major Foodborne Pathogens: Campylobacter and Salmonella

    Article • March 2012, IntechOpen

    Professor Eugénio Campos Ferreira

  88. Exploring the gap between dynamic and constraint-based models of metabolism

    Article • Metabolic Engineering, March 2012, Elsevier

    Professor Eugénio Campos Ferreira

  89. Kinetic and stoichiometric characterization of a fixed biofilm reactor by pulse respirometry

    Article • Journal of Biotechnology, January 2012, Elsevier

    Professor Guillermo Quijano, Professor Eugénio Campos Ferreira

  90. Genome-wide metabolic (re-) annotation of Kluyveromyces lactis

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  91. Stringent response of Escherichia coli: revisiting the bibliome using literature mining

    Article • Microbial Informatics and Experimentation, December 2011, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  92. Identification of minimal metabolic pathway models consistent with phenotypic data

    Article • Journal of Process Control, December 2011, Elsevier

    Professor Eugénio Campos Ferreira

  93. In situ pulse respirometric methods for the estimation of kinetic and stoichiometric parameters in aerobic microbial communities

    Article • Biochemical Engineering Journal, December 2011, Elsevier

    Professor Eugénio Campos Ferreira

  94. State and specific growth estimation in heterologous protein production by Pichia pastoris

    Article • AIChE Journal, November 2011, Wiley

    Professor Eugénio Campos Ferreira

  95. Identifying different types of bulking in an activated sludge system through quantitative image analysis

    Article • Chemosphere, October 2011, Elsevier

    Professor Eugénio Campos Ferreira

  96. Characterization of activated sludge abnormalities by image analysis and chemometric techniques

    Article • Analytica Chimica Acta, October 2011, Elsevier

    Professor Eugénio Campos Ferreira

  97. Genomic and Proteomic Characterization of the Broad-Host-Range Salmonella Phage PVP-SE1: Creation of a New Phage Genus

    Article • Journal of Virology, August 2011, ASM Journals

    Professor Eugénio Campos Ferreira

  98. Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling

    Article • IET Systems Biology, May 2011, the Institution of Engineering and Technology (the IET)

    Professor Eugénio Campos Ferreira

  99. Image analysis application for the study of activated sludge floc size during the treatment of synthetic and real fishery wastewaters

    Article • Environmental Science and Pollution Research, April 2011, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  100. Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations

    Article • Molecular BioSystems, January 2011, Royal Society of Chemistry

    Professor Eugénio Campos Ferreira

  101. Modeling formalisms in Systems Biology

    Article • AMB Express, January 2011, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  102. Semantic annotation of biological concepts interplaying microbial cellular responses

    Article • BMC Bioinformatics, January 2011, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  103. Interpreting the Regulatory Interplay in E. coli Metabolic Pathways

    Article • January 2011, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  104. A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems

    Article • January 2011, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  105. 10th International Chemical and Biological Engineering Conference – CHEMPOR 2008 – Integrating Life Sciences & Engineering Special Section

    Article • Biochemical Engineering Journal, December 2010, Elsevier

    Professor Eugénio Campos Ferreira

  106. A chemometric tool to monitor high-rate anaerobic granular sludge reactors during load and toxic disturbances

    Article • Biochemical Engineering Journal, December 2010, Elsevier

    Professor Eugénio Campos Ferreira

  107. Challenges in integrating Escherichia coli molecular biology data

    Article • Briefings in Bioinformatics, November 2010, Oxford University Press (OUP)

    Professor Eugénio Campos Ferreira

  108. Selection and Characterization of a Multivalent Salmonella Phage and Its Production in a Nonpathogenic Escherichia coli Strain

    Article • Applied and Environmental Microbiology, September 2010, ASM Journals

    Professor Eugénio Campos Ferreira

  109. Dilution and Magnification Effects on Image Analysis Applications in Activated Sludge Characterization

    Article • Microscopy and Microanalysis, August 2010, Cambridge University Press

    Professor Eugénio Campos Ferreira

  110. Virtual laboratories in (bio)chemical engineering education

    Article • Education for Chemical Engineers, May 2010, Elsevier

    Professor Eugénio Campos Ferreira

  111. Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis–Menten and approximate kinetic equations

    Article • Biosystems, May 2010, Elsevier

    Professor Eugénio Campos Ferreira

  112. OptFlux: an open-source software platform for in silico metabolic engineering

    Article • BMC Systems Biology, April 2010, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  113. BioDR: Semantic indexing networks for biomedical document retrieval

    Article • Expert Systems with Applications, April 2010, Elsevier

    Professor Eugénio Campos Ferreira

  114. A Comparison between Bright Field and Phase-Contrast Image Analysis Techniques in Activated Sludge Morphological Characterization

    Article • Microscopy and Microanalysis, January 2010, Cambridge University Press

    Professor Eugénio Campos Ferreira

  115. Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli

    Article • January 2010, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  116. Selection of Elementary Modes for Bioprocess Control

    Article • January 2010, Elsevier

    Professor Eugénio Campos Ferreira

  117. Merlin: Metabolic Models Reconstruction using Genome-Scale Information*

    Article • January 2010, Elsevier

    Professor Eugénio Campos Ferreira

  118. Evaluating the integration of proteomic data for the prediction of intracellular fluxes after knockout experiments

    Article • January 2010, Elsevier

    Professor Eugénio Campos Ferreira

  119. Application of image analysis to the prediction of EBC barley kernel weight distribution

    Article • Industrial Crops and Products, November 2009, Elsevier

    Professor Eugénio Campos Ferreira

  120. Comparison of adsorption equilibrium of fructose, glucose and sucrose on potassium gel-type and macroporous sodium ion-exchange resins

    Article • Analytica Chimica Acta, November 2009, Elsevier

    Professor Eugénio Campos Ferreira

  121. Metabolic footprinting of Escherichia coli grown in fed-batch fermentation during recombinant protein production

    Article • New Biotechnology, September 2009, Elsevier

    Professor Eugénio Campos Ferreira

  122. Quantitative monitoring of an activated sludge reactor using on-line UV-visible and near-infrared spectroscopy

    Article • Analytical and Bioanalytical Chemistry, August 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  123. Morphology and physiology of anaerobic granular sludge exposed to an organic solvent

    Article • Journal of Hazardous Materials, August 2009, Elsevier

    Professor Eugénio Campos Ferreira

  124. @Note: A workbench for Biomedical Text Mining

    Article • Journal of Biomedical Informatics, August 2009, Elsevier

    Professor Eugénio Campos Ferreira

  125. Galacto-oligosaccharides production during lactose hydrolysis by free Aspergillus oryzae β-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol

    Article • Food Chemistry, July 2009, Elsevier

    Professor Eugénio Campos Ferreira, Professor Victor Manuel Balcão

  126. Editorial: Special Issue Contributed by the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008

    Article • Chemical Product and Process Modeling, June 2009, De Gruyter

    Professor Eugénio Campos Ferreira

  127. Determination of Kinetic and Stoichiometric Parameters of Pseudomonas putida F1 by Chemostat and In Situ Pulse Respirometry

    Article • Chemical Product and Process Modeling, May 2009, De Gruyter

    Professor Eugénio Campos Ferreira

  128. Assessment of physiological conditions inE. colifermentations by epifluorescent microscopy and image analysis

    Article • Biotechnology Progress, May 2009, Wiley

    Professor Eugénio Campos Ferreira

  129. Correlation between sludge settling ability and image analysis information using partial least squares

    Article • Analytica Chimica Acta, May 2009, Elsevier

    Professor Eugénio Campos Ferreira

  130. Bringing Text Miners and Biologists Closer Together

    Article • Nature Precedings, April 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  131. Bringing Text Miners and Biologists Closer Together

    Article • Nature Precedings, April 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  132. Air pollution control with semi-infinite programming

    Article • Applied Mathematical Modelling, April 2009, Elsevier

    Professor Eugénio Campos Ferreira

  133. Study of saline wastewater influence on activated sludge flocs through automated image analysis

    Article • Journal of Chemical Technology & Biotechnology, April 2009, Wiley

    Professor Eugénio Campos Ferreira

  134. Principal component analysis and quantitative image analysis to predict effects of toxics in anaerobic granular sludge

    Article • Bioresource Technology, February 2009, Elsevier

    Professor Eugénio Campos Ferreira

  135. Inoculum type response to different pHs on biohydrogen production from l-arabinose, a component of hemicellulosic biopolymers

    Article • International Journal of Hydrogen Energy, February 2009, Elsevier

    Professor Eugénio Campos Ferreira

  136. Advanced monitoring of high-rate anaerobic reactors through quantitative image analysis of granular sludge and multivariate statistical analysis

    Article • Biotechnology and Bioengineering, February 2009, Wiley

    Professor Eugénio Campos Ferreira

  137. The 10th International Chemical and Biological Engineering Conference (CHEMPOR 2008)

    Article • International Journal of Chemical Engineering, January 2009, Hindawi Publishing Corporation

    Professor Eugénio Campos Ferreira

  138. Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  139. A Software Tool for the Simulation and Optimization of Dynamic Metabolic Models

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  140. Modelling of Biotechnological Processes – An Approach Based on Artificial Neural Networks

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  141. Computational Intelligence Techniques for Supervision and Diagnosis of Biological Wastewater Treatment Systems

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  142. The use of antibiotics to improve phage detection and enumeration by the double-layer agar technique

    Article • BMC Microbiology, January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  143. Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  144. A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  145. Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli

    Article • January 2009, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  146. A Dynamical Model for the Fermentative Production of Fructooligosaccharides

    Article • January 2009, Elsevier

    Professor Eugénio Campos Ferreira

  147. Natural computation meta-heuristics for the in silico optimization of microbial strains

    Article • BMC Bioinformatics, November 2008, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  148. Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains

    Article • October 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Eugénio Campos Ferreira

  149. A framework for the integrated analysis of metabolic and regulatory networks

    Article • October 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Eugénio Campos Ferreira

  150. A framework for the development of Biomedical Text Mining software tools

    Article • October 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Eugénio Campos Ferreira

  151. Monitoring of fed-batch E. coli fermentations with software sensors

    Article • Bioprocess and Biosystems Engineering, August 2008, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  152. Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants

    Article • Bioprocess and Biosystems Engineering, August 2008, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  153. Activated sludge process monitoring through in situ near-infrared spectral analysis

    Article • Water Science & Technology Water Supply, May 2008, IWA Publishing

    Professor Eugénio Campos Ferreira

  154. Stalked protozoa identification by image analysis and multivariable statistical techniques

    Article • Analytical and Bioanalytical Chemistry, March 2008, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  155. Quantification of the CBD-FITC conjugates surface coating on cellulose fibres

    Article • BMC Biotechnology, January 2008, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  156. Kinetic and stoichiometric parameters estimation in a nitrifying bubble column through “in-situ” pulse respirometry

    Article • Biotechnology and Bioengineering, January 2008, Wiley

    Professor Eugénio Campos Ferreira

  157. Development of a Method Using Image Analysis for the Measurement of Cellulose-Binding Domains Adsorbed onto Cellulose Fibers

    Article • Biotechnology Progress, December 2007, Wiley

    Professor Eugénio Campos Ferreira

  158. Analysis of the effects of hyperbaric gases on S. cerevisiae cell cycle through a morphological approach

    Article • Process Biochemistry, October 2007, Elsevier

    Professor Eugénio Campos Ferreira

  159. Recognition of protozoa and metazoa using image analysis tools, discriminant analysis, neural networks and decision trees

    Article • Analytica Chimica Acta, July 2007, Elsevier

    Professor Eugénio Campos Ferreira

  160. Exact Fuzzy Observer for a Baker's Yeast Fed-Batch Fermentation Process

    Article • June 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Eugénio Campos Ferreira

  161. Development of an image analysis procedure for identifying protozoa and metazoa typical of activated sludge system

    Article • Water Research, June 2007, Elsevier

    Professor Eugénio Campos Ferreira

  162. Quantitative image analysis as a diagnostic tool for identifying structural changes during a revival process of anaerobic granular sludge

    Article • Water Research, April 2007, Elsevier

    Professor Eugénio Campos Ferreira

  163. Raw data pre-processing in the protozoa and metazoa identification by image analysis and multivariate statistical techniques

    Article • Journal of Chemometrics, January 2007, Wiley

    Professor Eugénio Campos Ferreira

  164. Quantitative image analysis as a diagnostic tool for monitoring structural changes of anaerobic granular sludge during detergent shock loads

    Article • Biotechnology and Bioengineering, January 2007, Wiley

    Professor Eugénio Campos Ferreira

  165. Knowledge-based fuzzy system for diagnosis and control of an integrated biological wastewater treatment process

    Article • Water Science & Technology Water Supply, February 2006, IWA Publishing

    Professor Eugénio Campos Ferreira

  166. Activated sludge monitoring of a wastewater treatment plant using image analysis and partial least squares regression

    Article • Analytica Chimica Acta, July 2005, Elsevier

    Professor Eugénio Campos Ferreira

  167. Determination of diffusion coefficients of glycerol and glucose from starch based thermoplastic compounds on simulated physiological solution

    Article • Journal of Materials Science Materials in Medicine, March 2005, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  168. Assessment of yeast viability under hyperbaric conditions through a modeling approach

    Article • Journal of Chemical Technology & Biotechnology, January 2005, Wiley

    Professor Eugénio Campos Ferreira

  169. Effect of hyperbaric stress on yeast morphology: study by automated image analysis

    Article • Applied Microbiology and Biotechnology, July 2004, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  170. Survey of Protozoa and Metazoa populations in wastewater treatment plants by image analysis and discriminant analysis

    Article • Environmetrics, May 2004, Wiley

    Professor Eugénio Campos Ferreira, Professor Nicolas ROCHE

  171. Identification of Yield Coefficients in an E.coli Model – An Optimal Experimental Design Using Genetic Algorithms

    Article • IFAC Proceedings Volumes, March 2004, Elsevier

    Professor Eugénio Campos Ferreira

  172. Evolutionary Algorithms for Optimal Control in Fed-Batch Fermentation Processes

    Article • January 2004, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  173. Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: II. Application to a granule deterioration process triggered by contact with oleic acid

    Article • Biotechnology and Bioengineering, January 2004, Wiley

    Professor Eugénio Campos Ferreira

  174. Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: I. Application to a granulation process

    Article • Biotechnology and Bioengineering, January 2004, Wiley

    Professor Eugénio Campos Ferreira

  175. Automated image analysis to improve bead ingestion toxicity test counts in the protozoan Tetrahymena pyriformis

    Article • Letters in Applied Microbiology, September 2003, Wiley

    Professor Eugénio Campos Ferreira, Prof Nelson Lima

  176. Morphological analysis of Yarrowia lipolytica under stress conditions through image processing

    Article • Bioprocess and Biosystems Engineering, July 2003, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  177. Estimation of multiple biomass growth rates and biomass concentration in a class of bioprocesses

    Article • Bioprocess and Biosystems Engineering, July 2003, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  178. On-line simultaneous monitoring of glucose and acetate with FIA during high cell density fermentation of recombinant E. coli

    Article • Analytica Chimica Acta, July 2002, Elsevier

    Professor Eugénio Campos Ferreira

  179. Stability, dynamics of convergence and tuning of observer-based kinetics estimators

    Article • Journal of Process Control, February 2002, Elsevier

    Professor Eugénio Campos Ferreira

  180. The study of protozoa population in wastewater treatment plants by image analysis

    Article • Brazilian Journal of Chemical Engineering, March 2001, FapUNIFESP (SciELO)

    Professor Eugénio Campos Ferreira

  181. Article • Biotechnology Letters, January 2001, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  182. Can spreadsheet solvers solve demanding optimization problems?

    Article • Computer Applications in Engineering Education, January 2001, Wiley

    Professor Eugénio Campos Ferreira

  183. Tuning of observer-based estimators: theory and application to the on-line estimation of kinetic parameters

    Article • Control Engineering Practice, April 2000, Elsevier

    Professor Eugénio Campos Ferreira

  184. Staged and non-staged anaerobic filters: performance in relation to physical and biological characteristics of microbial aggregates

    Article • Journal of Chemical Technology & Biotechnology, January 2000, Wiley

    Professor Eugénio Campos Ferreira

  185. Article • Biotechnology Techniques, January 1999, Springer Science + Business Media

    Professor Eugénio Campos Ferreira, Prof Nelson Lima

  186. Mass transfer properties of glucose and O2 in Saccharomyces cerevisiae flocs

    Article • Biochemical Engineering Journal, September 1998, Elsevier

    Professor Eugénio Campos Ferreira

  187. Modelling diffusion-reaction phenomena in yeast flocs of Saccharomyces cerevisiae

    Article • Bioprocess Engineering, May 1998, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  188. Modelling diffusion-reaction phenomena in yeast flocs of

    Article • Bioprocess Engineering, January 1998, Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  189. A study on the convergence of observer-based kinetics estimators in stirred tank bioreactors

    Article • Journal of Process Control, December 1996, Elsevier

    Professor Eugénio Campos Ferreira

  190. Adaptive linearizing control of bioreactors

    Article • January 1996, the Institution of Engineering and Technology (the IET)

    Professor Eugénio Campos Ferreira

  191. Chapter 18 Dynamic Modelling of Complex Enzymatic Reactions

    Article • January 1990, Elsevier

    Professor Eugénio Campos Ferreira

  192. NEW METHODOLOGIES FOR MULTIPHASE BIOREACTORS 2

    Article • Taylor & Francis

    Professor Eugénio Campos Ferreira

  193. Evolutionary Algorithms for Static and Dynamic Optimization of Fed-batch Fermentation Processes

    Article • Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  194. Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains

    Article • Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  195. Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes

    Article • Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  196. Differential Evolution for the Offline and Online Optimization of Fed-Batch Fermentation Processes

    Article • Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  197. Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis

    Article • Springer Science + Business Media

    Professor Eugénio Campos Ferreira

  198. How Wastewater Processes can be Optimized Using LOQO

    Article • Springer Science + Business Media

    Professor Eugénio Campos Ferreira