All Stories

  1. Lentiviral Micro-dystrophin Gene Treatment into Late-stage mdx Mice for Duchenne Muscular Dystrophy Disease

    Article • Current Gene Therapy, August 2023, Bentham Science Publishers

    Ahmet Tarık Baykal, CIHAN TASTAN, Sevdican Ustun Yilmaz

  2. Molecular Effects of Pteryxin and Scopoletin in the 5xFAD Alzheimer’s Disease Mouse Model

    Article • Current Medicinal Chemistry, May 2022, Bentham Science Publishers

    Ahmet Tarık Baykal

  3. Evaluation of the Therapeutic Effect of Lycoramine on Alzheimer’s Disease in Mouse Model

    Article • Current Medicinal Chemistry, June 2021, Bentham Science Publishers

    Ahmet Tarık Baykal

  4. Proteins associated with neutrophil degranulation are upregulated in nasopharyngeal swabs from SARS-CoV-2 patients

    Article • PLoS ONE, October 2020, PLOS

    Ahmet Tarık Baykal

  5. A Proteomic Analysis of Mitochondrial Complex III Inhibition in SH-SY5Y Human Neuroblastoma Cell Line

    Article • Current Proteomics, January 2019, Bentham Science Publishers

    Ahmet Tarık Baykal, Emel Akgun

  6. Proteomic Analysis of Liver Preservation Solutions Prior to Liver Transplantation

    Article • Current Proteomics, January 2019, Bentham Science Publishers

    Abdurrahman Coskun, Ahmet Tarık Baykal, ilknur yurtsever

  7. Identification of candidate biomarkers in converting and non-converting clinically isolated syndrome by proteomics analysis of cerebrospinal fluid

    Article • Acta Neurologica Belgica, June 2018, Springer Science + Business Media

    Ahmet Tarık Baykal, Emel Akgun

  8. Neonatal Neurodegeneration in Alzheimer’s Disease Transgenic Mouse Model

    Article • Journal of Alzheimer s Disease Reports, April 2018, IOS Press

    Ahmet Tarık Baykal

  9. Early Stage Alterations in CA1 Extracellular Region Proteins Indicate Dysregulation of IL6 and Iron Homeostasis in the 5XFAD Alzheimer’s Disease Mouse Model

    Article • Journal of Alzheimer s Disease, January 2018, IOS Press

    Ahmet Tarık Baykal

  10. In vivo evolutionary engineering for ethanol-tolerance of Saccharomyces cerevisiae haploid cells triggers diploidization

    Article • Journal of Bioscience and Bioengineering, September 2017, Elsevier

    Ahmet Tarık Baykal

  11. Clinical applications of MALDI imaging technologies in cancer and neurodegenerative diseases

    Article • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, July 2017, Elsevier

    Ahmet Tarık Baykal

  12. Time-of-Day Dependent Neuronal Injury After Ischemic Stroke: Implication of Circadian Clock Transcriptional Factor Bmal1 and Survival Kinase AKT

    Article • Molecular Neurobiology, April 2017, Springer Science + Business Media

    Ahmet Tarık Baykal

  13. Detailed tail proteomic analysis of axolotl (Ambystoma mexicanum) using an mRNA-seq reference database

    Article • PROTEOMICS, January 2017, Wiley

    Ahmet Tarık Baykal, Emel Akgun

  14. Proteomics analysis of mitochondrial dysfunction triggered by complex specific electron transport chain inhibitors reveals common pathways involving protein misfolding in an SH-SY5Y in vitro cell model

    Article • TURKISH JOURNAL OF BIOLOGY, January 2017, The Scientific and Technological Research Council of Turkey

    Ahmet Tarık Baykal

  15. Tumor necrosis factor-alpha induced caspase-3 activation-related iNOS gene expression in ADP-activated platelets

    Article • TURKISH JOURNAL OF BIOLOGY, January 2017, The Scientific and Technological Research Council of Turkey

    Ahmet Tarık Baykal

  16. Proteomic Analysis of Kidney Preservation Solutions Prior to Renal Transplantation

    Article • PLoS ONE, December 2016, PLOS

    Ahmet Tarık Baykal

  17. Proteomic profiling of HBV infected liver biopsies with different fibrotic stages

    Article • Proteome Science, December 2016, Springer Science + Business Media

    Ahmet Tarık Baykal, Emel Akgun

  18. Changes in serum proteins after endotoxin administration in healthy and choline-treated calves

    Article • BMC Veterinary Research, September 2016, Springer Science + Business Media

    Ahmet Tarık Baykal

  19. Toll like receptor 9 antagonism modulates spinal cord neuronal function and survival: Direct versus astrocyte-mediated mechanisms

    Article • Brain Behavior and Immunity, August 2016, Elsevier

    Ahmet Tarık Baykal

  20. Platelets Proteomic Profiles of Acute Ischemic Stroke Patients

    Article • PLoS ONE, June 2016, PLOS

    Ahmet Tarık Baykal

  21. Proteome profiling of the compatible interaction between wheat and stripe rust

    Article • European Journal of Plant Pathology, February 2016, Springer Science + Business Media

    Ahmet Tarık Baykal

  22. Master redox regulator Trx1 upregulates SMYD1 & modulates lysine methylation

    Article • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, December 2015, Elsevier

    Ahmet Tarık Baykal

  23. Linking a compound-heterozygous Parkin mutant (Q311R and A371T) to Parkinson's disease by using proteomic and molecular approaches

    Article • Neurochemistry International, June 2015, Elsevier

    Ahmet Tarık Baykal

  24. Dilate Kardiyomiyopatili Köpeklerde Serum ve Asites Sıvısı Proteomlarının Araştırılması

    Article • Kafkas Universitesi Veteriner Fakultesi Dergisi, January 2015, Kafkas University

    Ahmet Tarık Baykal

  25. A proteomic analysis of p53-independent induction of apoptosis by bortezomib in 4T1 breast cancer cell line

    Article • Journal of Proteomics, January 2015, Elsevier

    Ahmet Tarık Baykal

  26. Data for a proteomic analysis of p53-independent induction of apoptosis by bortezomib

    Article • Data in Brief, December 2014, Elsevier

    Ahmet Tarık Baykal

  27. Hepatitis B virus e antigen (HBeAg) may have a negative effect on dendritic cell generation

    Article • Immunobiology, December 2014, Elsevier

    Ahmet Tarık Baykal

  28. Biochemical and Proteomic Analysis of a Potential Anticancer Agent: Palladium(II) Saccharinate Complex of Terpyridine Acting through Double Strand Break Formation

    Article • Journal of Proteome Research, November 2014, American Chemical Society (ACS)

    Professor Veysel T. Yilmaz, Ahmet Tarık Baykal

  29. Evaluation of apoptotic molecular pathways for smooth muscle cells isolated from thoracic aortic aneurysms in response to oxidized sterols

    Article • Molecular Biology Reports, September 2014, Springer Science + Business Media

    Ahmet Tarık Baykal

  30. Proteomic Study of the Microdissected Aortic Media in Human Thoracic Aortic Aneurysms

    Article • Journal of Proteome Research, September 2014, American Chemical Society (ACS)

    Ahmet Tarık Baykal

  31. Investigation of the Abundance of Proteins Secreted by Fasciola hepatica, Which is Exposed to Environmental Change in Experimental Studies, with an Advanced Proteomic Approach

    Article • Turkish Journal of Parasitology, July 2014, Journal of Clinical Research of Pediatric Endocrinology

    Ahmet Tarık Baykal

  32. Identification of ApoA1, HPX and POTEE genes by omic analysis in breast cancer

    Article • Oncology Reports, June 2014, Spandidos Publications

    Ahmet Tarık Baykal

  33. Generating a detailed protein profile ofFasciola hepaticaduring the chronic stage of infection in cattle

    Article • PROTEOMICS, May 2014, Wiley

    Ahmet Tarık Baykal

  34. mTor Is a Signaling Hub in Cell Survival: A Mass-Spectrometry-Based Proteomics Investigation

    Article • Journal of Proteome Research, April 2014, American Chemical Society (ACS)

    Ahmet Tarık Baykal

  35. Evaluation of the molecular mechanisms of a palladium(II) saccharinate complex with terpyridine as an anticancer agent

    Article • Anti-Cancer Drugs, January 2014, Wolters Kluwer Health

    Professor Veysel T. Yilmaz, Ahmet Tarık Baykal

  36. A preliminary proteomic evaluation of smooth muscle cells in thoracic aortic aneurysms

    Article • TURKISH JOURNAL OF BIOLOGY, January 2014, The Scientific and Technological Research Council of Turkey

    Ahmet Tarık Baykal

  37. A novel method to differentiate bovine and porcine gelatins in food products: NanoUPLC-ESI-Q-TOF-MSE based data independent acquisition technique to detect marker peptides in gelatin

    Article • Food Chemistry, December 2013, Elsevier

    Ahmet Tarık Baykal

  38. Identification of differentially expressed proteins in atherosclerotic aorta and effect of vitamin E

    Article • Journal of Proteomics, October 2013, Elsevier

    Ahmet Tarık Baykal

  39. The apoptotic actions of platelets in acute ischemic stroke

    Article • Molecular Biology Reports, September 2013, Springer Science + Business Media

    Ahmet Tarık Baykal

  40. Proteomic evidence for the plasticity of cultured vascular smooth muscle cells

    Article • TURKISH JOURNAL OF BIOLOGY, January 2013, The Scientific and Technological Research Council of Turkey

    Ahmet Tarık Baykal

  41. A Proteomic Approach To Investigate the Distribution and Abundance of Surface and Internal Fasciola hepatica Proteins during the Chronic Stage of Natural Liver Fluke Infection in Cattle

    Article • Journal of Proteome Research, May 2012, American Chemical Society (ACS)

    Ahmet Tarık Baykal

  42. Thioredoxin 1-Mediated Post-Translational Modifications: Reduction, Transnitrosylation, Denitrosylation, and Related Proteomics Methodologies

    Article • Antioxidants & Redox Signaling, November 2011, Mary Ann Liebert Inc

    Ahmet Tarık Baykal

  43. Redox Regulatory Mechanism of Transnitrosylation by Thioredoxin

    Article • Molecular & Cellular Proteomics, July 2010, American Society for Biochemistry & Molecular Biology (ASBMB)

    Ahmet Tarık Baykal

  44. Proton Bridging in the Interactions of Thrombin with Small Inhibitors

    Article • Biochemistry, August 2009, American Chemical Society (ACS)

    Ahmet Tarık Baykal

  45. Snapshot of a Reaction Intermediate: Analysis of Benzoylformate Decarboxylase in Complex with a Benzoylphosphonate Inhibitor†

    Article • Biochemistry, April 2009, American Chemical Society (ACS)

    Ahmet Tarık Baykal

  46. Aberrant regulation of choline metabolism by mitochondrial electron transport system inhibition in neuroblastoma cells

    Article • Metabolomics, September 2008, Springer Science + Business Media

    Ahmet Tarık Baykal

  47. The 1′,4′-iminopyrimidine tautomer of thiamin diphosphate is poised for catalysis in asymmetric active centers on enzymes

    Article • Proceedings of the National Academy of Sciences, January 2007, Proceedings of the National Academy of Sciences

    Ahmet Tarık Baykal

  48. Synthesis with good enantiomeric excess of both enantiomers of α-ketols and acetolactates by two thiamin diphosphate-dependent decarboxylases

    Article • Bioorganic Chemistry, December 2006, Elsevier

    Ahmet Tarık Baykal

  49. Electronic and Nuclear Magnetic Resonance Spectroscopic Features of the 1‘,4‘-Iminopyrimidine Tautomeric Form of Thiamin Diphosphate, a Novel Intermediate on Enzymes Requiring This Coenzyme†

    Article • Biochemistry, June 2006, American Chemical Society (ACS)

    Ahmet Tarık Baykal

  50. Tetrahedral Intermediates in Thiamin Diphosphate-Dependent Decarboxylations Exist as a 1‘,4‘-Imino Tautomeric Form of the Coenzyme, Unlike the Michaelis Complex or the Free Coenzyme†

    Article • Biochemistry, June 2004, American Chemical Society (ACS)

    Ahmet Tarık Baykal